Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_I04
(870 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 307 9e-84
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 304 6e-83
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847... 31 1.2
11_04_0146 - 14091671-14092357,14092996-14093229 29 4.8
06_01_0624 + 4542344-4543447 29 4.8
05_04_0324 - 20273797-20274261 29 4.8
02_05_0253 - 27175082-27175299,27175395-27175890,27176009-271761... 29 6.4
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 307 bits (753), Expect = 9e-84
Identities = 140/256 (54%), Positives = 184/256 (71%), Gaps = 1/256 (0%)
Frame = +3
Query: 48 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 227
F+HP HGS+GF P+KRS RHRGKVK+FPKDD SKP HLT+F+GYKAGMTH+VRE ++PGS
Sbjct: 6 FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVEKPGS 65
Query: 228 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 407
K++KKE EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW
Sbjct: 66 KLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKS 125
Query: 408 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRXKKAHIMEIQ 584
+ + G+K I+ +KM +Y S+VRVIAHTQ++ +K + KKAH+MEIQ
Sbjct: 126 KKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAHLMEIQ 185
Query: 585 LNGGTIEDXVKWARXHLGETYPWSILCLXXMK*LTALVSPRAKDTKGVTSRWHTKKLPRK 764
+NGGTI D V + + P + + + + + K +GV +RW +LPRK
Sbjct: 186 INGGTIADKVDYGYKFFEKEIPVDAV-FQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRK 244
Query: 765 THKGLRKVACIGAWHP 812
TH+GLRKVACIGAWHP
Sbjct: 245 THRGLRKVACIGAWHP 260
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 304 bits (746), Expect = 6e-83
Identities = 139/256 (54%), Positives = 183/256 (71%), Gaps = 1/256 (0%)
Frame = +3
Query: 48 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 227
F+HP HGS+GF P+KRS RHRGKVK+FPKDD +KP HLT+F+GYKAGMTH+VRE ++PGS
Sbjct: 6 FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREVEKPGS 65
Query: 228 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 407
K++KKE EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW
Sbjct: 66 KLHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKS 125
Query: 408 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRXKKAHIMEIQ 584
+ + G+K I+ +KM +Y SVVRVI HTQ++ +K + KKAH+MEIQ
Sbjct: 126 KKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASVVRVIVHTQIRKMKGLKQKKAHLMEIQ 185
Query: 585 LNGGTIEDXVKWARXHLGETYPWSILCLXXMK*LTALVSPRAKDTKGVTSRWHTKKLPRK 764
+NGGTI D V + + P + + + + + K +GV +RW +LPRK
Sbjct: 186 INGGTIADKVDYGYKFFEKEIPVDAV-FQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRK 244
Query: 765 THKGLRKVACIGAWHP 812
TH+GLRKVACIGAWHP
Sbjct: 245 THRGLRKVACIGAWHP 260
>01_06_0083 +
26283492-26283756,26284255-26284467,26284620-26284771,
26284884-26285157,26285277-26285485
Length = 370
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 467 NRKRFQEDDPLL*CCKSHCPHSNEAVKTATKEGSHYGNP 583
N +RF +DPLL CC H P+ A T + + +G+P
Sbjct: 297 NPRRFGINDPLLACCGGHGPYHTGA--TCDRTATVWGDP 333
>11_04_0146 - 14091671-14092357,14092996-14093229
Length = 306
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 708 AKDTKGVTSRWHTKKLPRKTHKGLRKVACIGAW 806
AK K T RWH K++ K K KV +W
Sbjct: 265 AKIYKDRTKRWHDKRIKHKEFKAGDKVLLFNSW 297
>06_01_0624 + 4542344-4543447
Length = 367
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 590 RWYHRGXSEMGQXTSGRNLSLVDSVFXXDEMIDCIGVTKGKGYQRCHFSLAHKET 754
R++H G + G SG+N+S++ V +D + K RCH S +ET
Sbjct: 310 RFFHTG--DFGDGLSGQNVSVLTGVEFTHANVDHENIGLIKHKSRCHKSSCGEET 362
>05_04_0324 - 20273797-20274261
Length = 154
Score = 29.1 bits (62), Expect = 4.8
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +3
Query: 126 FPKDDPSKPVHLTAFIGYKAGMTHVVRE--PDRPGSKINKKEIVEAVTIIETPPMVCVGV 299
FP D+P K VH+ G + +T ++ E P + +N EA + P CVGV
Sbjct: 60 FPPDNPQKFVHVHRVFG-ASNVTKLLNELHPYQREDAVNSL-AYEADMRLRDPVYGCVGV 117
Query: 300 VGYIETPHGLRAL 338
+ ++ H LR L
Sbjct: 118 ISVLQ--HQLRQL 128
>02_05_0253 -
27175082-27175299,27175395-27175890,27176009-27176142,
27176231-27176474
Length = 363
Score = 28.7 bits (61), Expect = 6.4
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = -3
Query: 853 PFXTSTXYSDDTXRGCQAPMQATFLRPLCVLRGSFFVCQREVTPLVSFALGDTNAVNHFI 674
P + S+D RGC P+ LR L S E+ P ++++L D+ A+ FI
Sbjct: 224 PSQRARRLSEDGTRGCYGPINTLSLRSYPTLAASLRDLADEL-PSMAYSLSDSFAMVSFI 282
Query: 673 XXKHR 659
R
Sbjct: 283 FANPR 287
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,000,143
Number of Sequences: 37544
Number of extensions: 514036
Number of successful extensions: 1144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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