Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_H21
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    32   0.094
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.38 
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    27   3.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.7  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    26   6.2  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 32.3 bits (70), Expect = 0.094
 Identities = 33/130 (25%), Positives = 39/130 (30%), Gaps = 2/130 (1%)
 Frame = -2

Query: 853 PPXPXRXX--PTXXXXXREXPPKPXXXGVXXPXXQPPPGXRXXPPXADXAPAAXXXXXXA 680
           PP P      PT        PP         P   PP      PP    AP        +
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPS 189

Query: 679 XPEDIXNXATXVPPSPRXGXAPXLDRAVTAHXPDSNIPVYSXCPITKXISSLFVHPRTEL 500
            P  +      VPP P    AP    A T+  P S  P     P     S  F +    +
Sbjct: 190 LPSAVPPMPPKVPPPP-LSQAPV---ANTSSRPSSFAPPAGHAPNVTSESPKFPNRGPSI 245

Query: 499 ERASLHVVGP 470
             AS+  V P
Sbjct: 246 PSASVPPVPP 255


>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 207 VRVHRANTGRSSNELDRQTTELERR 281
           +R H+ + GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 131 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNK 33
           Y    ES + D+ +  SH+ A +I Q  R+G +
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 23/94 (24%), Positives = 29/94 (30%), Gaps = 1/94 (1%)
 Frame = -2

Query: 859  GXPPXPX-RXXPTXXXXXREXPPKPXXXGVXXPXXQPPPGXRXXPPXADXAPAAXXXXXX 683
            G PP P     P         PP P    V  P   P P     PP    + AA      
Sbjct: 1081 GAPPVPAPSGIPPVPKPSVAAPPVPKP-SVAVP---PVPAPSGAPPVPKPSVAAPPVPVP 1136

Query: 682  AXPEDIXNXATXVPPSPRXGXAPXLDRAVTAHXP 581
            +    +   +   PP P    AP + +   A  P
Sbjct: 1137 SGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPP 1170


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 386 RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMH 520
           RA +++   +  +KR DI    +   DNW ND+  C  + G  +H
Sbjct: 588 RAVIAHMLELDPVKRYDIHRVFA---DNWINDISMCHMENGKVIH 629


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,963,502
Number of Sequences: 5004
Number of extensions: 56279
Number of successful extensions: 165
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)