Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_H17
(965 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.18
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 0.74
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.98
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 3.0
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 5.2
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 5.2
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p... 26 6.9
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.5 bits (68), Expect = 0.18
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +2
Query: 542 PPPXXXXXXGXPPPPPPXXXXXXGG 616
PPP G PPPPPP GG
Sbjct: 765 PPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 29.9 bits (64), Expect = 0.56
Identities = 11/31 (35%), Positives = 13/31 (41%)
Frame = +2
Query: 542 PPPXXXXXXGXPPPPPPXXXXXXGGGGGXFF 634
PPP G PPPPP GG ++
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPPAVSAGGSRYY 793
Score = 27.1 bits (57), Expect = 4.0
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = -1
Query: 773 PPPPPPPXXFXXXXXKKKXPXPP 705
PPPPPPP P PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783
Score = 26.6 bits (56), Expect = 5.2
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -1
Query: 797 GXXXXXPXPPPPPPP 753
G P PPPPPPP
Sbjct: 769 GVAGAGPPPPPPPPP 783
Score = 26.2 bits (55), Expect = 6.9
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +1
Query: 541 PPPXXFXXXGXPPPPPP 591
PPP PPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPP 768
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.5 bits (63), Expect = 0.74
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 541 PPPXXFXXXGXPPPPPP 591
PPP F PPPPPP
Sbjct: 13 PPPPGFEPPSQPPPPPP 29
Score = 28.7 bits (61), Expect = 1.3
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = -2
Query: 781 PPXPPPPPPPXXFXXXXXKKKXXPP 707
P PPPPPPP F PP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 26.2 bits (55), Expect = 6.9
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -2
Query: 781 PPXPPPPPPPXXF 743
PP PPPPPP +
Sbjct: 20 PPSQPPPPPPPGY 32
Score = 25.8 bits (54), Expect = 9.1
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = -2
Query: 781 PPXPPPPPPPXXFXXXXXKKKXXPP 707
PP PPPPPP + PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPP 29
Score = 25.8 bits (54), Expect = 9.1
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = -1
Query: 779 PXPPPPPPPXXFXXXXXKKKXPXPP 705
P PPPPPP + P PP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 25.8 bits (54), Expect = 9.1
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +2
Query: 542 PPPXXXXXXGXPPPPPP 592
PPP PPPPPP
Sbjct: 14 PPPGFEPPSQPPPPPPP 30
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.1 bits (62), Expect = 0.98
Identities = 20/60 (33%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Frame = +3
Query: 756 GGGGGGXGGXXXXPX-FXXXXXXXXPPPXXXXXXXXGGGGGXXXXXKKXXXGGGGGGGGG 932
GG GGG GG P F GGG G GG GG GGG
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGG 250
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 27.5 bits (58), Expect = 3.0
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -2
Query: 781 PPXPPPPPPPXXF 743
PP PPPPPP F
Sbjct: 306 PPPPPPPPPSNDF 318
Score = 26.2 bits (55), Expect = 6.9
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -3
Query: 792 GXXXPPXPPPPPPXXFF 742
G PP PPPPP F+
Sbjct: 303 GGLPPPPPPPPPSNDFW 319
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 5.2
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = -1
Query: 779 PXPPPPPPPXXFXXXXXKKKXPXP 708
P PPPPPPP + P P
Sbjct: 236 PAPPPPPPPTLPPQSTNTSQLPMP 259
Score = 26.2 bits (55), Expect = 6.9
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -3
Query: 780 PPXPPPPPP 754
PP PPPPPP
Sbjct: 189 PPPPPPPPP 197
Score = 26.2 bits (55), Expect = 6.9
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -2
Query: 778 PXPPPPPPP 752
P PPPPPPP
Sbjct: 189 PPPPPPPPP 197
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 5.2
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -1
Query: 797 GXXXXXPXPPPPPPP 753
G P PPPPPPP
Sbjct: 939 GVMPAFPPPPPPPPP 953
>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 485
Score = 26.2 bits (55), Expect = 6.9
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 57 PTWFNRREPIWXGA 98
PTW+++ EPIW A
Sbjct: 161 PTWWDKGEPIWVNA 174
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,601,435
Number of Sequences: 5004
Number of extensions: 44833
Number of successful extensions: 536
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 495302128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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