Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_H14
         (916 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.70 
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    29   0.70 
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    29   1.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.9  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    27   4.9  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    26   6.5  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   8.6  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    26   8.6  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
 Frame = +1

Query: 301 SSPMTPPSTTRVGRRRCFIDDFRPRLPPWDS---------GSGSGASTLTPRKAQRCSSK 453
           S P  PP ++RV       +  RP  PP  S         G+GS  S+L P      S+ 
Sbjct: 288 SKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNA 347

Query: 454 GVALRTPR*ASPSRLGASIPPPPP 525
             ++  P    P   G S PPPPP
Sbjct: 348 AGSIPLP----PQ--GRSAPPPPP 365


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -3

Query: 407 PLPEPLSHGGSRGLKSSMKQRLLPTRVVDGGVIGEERQ 294
           P   P+S G SRG  SS++Q++  +  ++ G + E  Q
Sbjct: 576 PTTRPVSRGLSRGTSSSLQQKVKASTPLNSGALNETVQ 613


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 578 FDLRGPRYGLVEHRDWANGGGGGIDAPSREGD 483
           F+L    Y L E  +W  GG  G+ AP+ E D
Sbjct: 160 FELDVSNYPLPEGEEWMVGGSFGVMAPNNEED 191


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 472  PR*ASPSRLGASIPPPPPFA 531
            P+ A+P ++ A  PPPPP +
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMS 1713


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 560 RYGLVEHRDWANGGGGGIDAPSREGD 483
           +Y L+E +DW  GG  GI  P+ + +
Sbjct: 193 KYPLLEGKDWKIGGSFGIMPPNSDAE 218


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +3

Query: 462 PPNTTLSIPLPTRRVNTPAPTVRPITMFDQPIPWAPKVKYLGVT 593
           PP  + + P PT   NTPA      T+    IP  P V  +G T
Sbjct: 211 PPGFSPATPAPTSAANTPA------TIAATSIPPVPNVPLVGAT 248


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
 Frame = +3

Query: 273 PRSPETHLALFADDTAIYYSCRKKALLHRRL---QTAATTMGQWFRKWRIDINPTKSTAV 443
           P++ +   +LF+D++ +  S    +L          ++  +   F++ +       ST +
Sbjct: 326 PQTQQNESSLFSDNSMVNSSSNSFSLFPNATLPNPPSSELLTTPFQQIKPPSQVFMSTGL 385

Query: 444 LFKRGRPPNTTLSIPLPTRRVNTPAPTVRP 533
           L K+ RP       PLP    + P+  VRP
Sbjct: 386 LSKQHRPRKNINFTPLPPSTPSKPSTFVRP 415


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 396 FRKWRIDINPTKSTAVLFKRGRPPNTTLSIPL 491
           F+ W+    P+ S  +L ++G PP + LS  L
Sbjct: 260 FQIWKAHNPPSSSKFILEQKGLPPESNLSSEL 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,395,010
Number of Sequences: 5004
Number of extensions: 75427
Number of successful extensions: 268
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)