Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_H11
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    28   2.0  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    27   3.4  
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S...    27   4.5  
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida...    27   4.5  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    27   4.5  
SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans...    26   6.0  

>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +2

Query: 473 GAAFIPSHLIXLHCYIKTNITSHLDL*PACALPASPGTYDDNTDYNIAVIYSE--YDITT 646
           G  F   +L+ L   I T I   LDL      PA P T    T + I+ +  +  + I+ 
Sbjct: 545 GFVFSSINLLTLGVPIATIIIRALDLITIVVPPALPATLTIGTTFAISRLRKQGIFCISP 604

Query: 647 QTVFVSGDDSLVS 685
           Q V VSG   L+S
Sbjct: 605 QRVNVSGKLDLIS 617


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +3

Query: 771 SSAAILGTGRSHSCSPCPTGQXCVSP 848
           SSA+ILG      C  CP    C SP
Sbjct: 355 SSASILGISFPSLCRTCPPNAICPSP 380


>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
           Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +2

Query: 8   KRHPNHK--VPFQPDLFVECINLNEYSQLSNKTQAVIQANPNRSDP 139
           K HP  K  V   PD+ ++ I  N    L N +  +I+  PN+ DP
Sbjct: 84  KVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDP 129


>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
           imidazole acetol phosphate transaminase
           His3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 6   VNDIPIIKFLFSPTSSLNVSISMSTHSFPTRLKL 107
           +ND+ ++K L  P  +LNV     T S  + +K+
Sbjct: 124 INDVEVVKVLLEPDFNLNVDAICETLSKDSAIKV 157


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 81  HSFPTRLKLSSKRTQIVRIP 140
           H  P R++LSS+  QI RIP
Sbjct: 5   HGTPQRIQLSSRAIQICRIP 24


>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
           transporter Hut1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +3

Query: 72  MSTHSFPTRLKLSSKRTQIVRIPTGGTLLSAYFQKLSIKSTKAQF-SALGKACQTLALMH 248
           ++ H F  + K    +  IV + T G  + +YFQ  S K   A+  S +G       L+ 
Sbjct: 118 IALHVFVYKRKFPPHKYLIVTMITAGVSIFSYFQNTSSKGKHAEHDSPIGLLLLFFNLLM 177

Query: 249 DAI 257
           D I
Sbjct: 178 DGI 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,698,255
Number of Sequences: 5004
Number of extensions: 81091
Number of successful extensions: 236
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)