Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_H11
         (864 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL365181-9|CAI13053.1|  370|Homo sapiens G patch domain containi...    31   5.4  
AK024290-1|BAB14875.1|  590|Homo sapiens protein ( Homo sapiens ...    31   5.4  
AB040956-1|BAA96047.1|  687|Homo sapiens KIAA1523 protein protein.     31   5.4  
BC063288-1|AAH63288.1| 1007|Homo sapiens protocadherin alpha sub...    31   7.2  
AF152304-1|AAD43698.1| 1007|Homo sapiens protocadherin alpha C2 ...    31   7.2  

>AL365181-9|CAI13053.1|  370|Homo sapiens G patch domain containing
           4 protein.
          Length = 370

 Score = 31.1 bits (67), Expect = 5.4
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
 Frame = -1

Query: 480 AAPFSSVPRQRPHHAE--IGQTQSSHCRHEFVMVSDGTKQTERDRMEFGLHTQTSWEDDL 307
           A+  +    + P HAE  I +++    RH+   VSD  + T +   +      TS   +L
Sbjct: 219 ASERNDADEKHPEHAEQNIRKSKKKKRRHQEGKVSDEREGTTKGNEKEDA-AGTSGLGEL 277

Query: 306 YCRKFADIS*-SGQKLRQWHHASRLMSGMLSQGPK 205
             R+  + S   G+K ++WHH    M G+L +G K
Sbjct: 278 NSREQTNQSLRKGKKKKRWHHEEEKM-GVLEEGGK 311


>AK024290-1|BAB14875.1|  590|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14228 fis, clone NT2RP3004148. ).
          Length = 590

 Score = 31.1 bits (67), Expect = 5.4
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 587 YDDNTDYNIAVIYSEYDITTQTVFVSGDDSLVSPPPP 697
           YD+NT +   + YSE+  T   V  S D S  +PP P
Sbjct: 431 YDENTKHYELLNYSEHGTTVDNVLYSCDFSEKTPPTP 467


>AB040956-1|BAA96047.1|  687|Homo sapiens KIAA1523 protein protein.
          Length = 687

 Score = 31.1 bits (67), Expect = 5.4
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 587 YDDNTDYNIAVIYSEYDITTQTVFVSGDDSLVSPPPP 697
           YD+NT +   + YSE+  T   V  S D S  +PP P
Sbjct: 528 YDENTKHYELLNYSEHGTTVDNVLYSCDFSEKTPPTP 564


>BC063288-1|AAH63288.1| 1007|Homo sapiens protocadherin alpha
           subfamily C, 2 protein.
          Length = 1007

 Score = 30.7 bits (66), Expect = 7.2
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 95  KTQAVIQANPNRSDPDWRYTA-VRIFSKTQHKINEGSIFGPWESMPD 232
           K +AV Q  P + +PDWRY+A +R    +   + E  I       PD
Sbjct: 847 KNEAVSQNEPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPD 893


>AF152304-1|AAD43698.1| 1007|Homo sapiens protocadherin alpha C2
           protein.
          Length = 1007

 Score = 30.7 bits (66), Expect = 7.2
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 95  KTQAVIQANPNRSDPDWRYTA-VRIFSKTQHKINEGSIFGPWESMPD 232
           K +AV Q  P + +PDWRY+A +R    +   + E  I       PD
Sbjct: 847 KNEAVSQNEPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPD 893


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,026,992
Number of Sequences: 237096
Number of extensions: 3036647
Number of successful extensions: 7250
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7243
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 11039988564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)