Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_H11
         (864 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    25   0.90 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    25   0.90 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    24   1.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   4.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   4.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.3  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   6.3  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.90
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = +2

Query: 536 SHLDL*PACALPASPGTYDDNTDYNIAVIYSEYDITTQTVFVSGDDSLVSPPPPAHP 706
           S LD+ P  A   +PG +  +   +     +       +   SG +  V+P PP HP
Sbjct: 46  SPLDMKPDTASLINPGNFSPSGPNSPGSFTAGCHSNLLSTSPSGQNKAVAPYPPNHP 102


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.90
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = +2

Query: 536 SHLDL*PACALPASPGTYDDNTDYNIAVIYSEYDITTQTVFVSGDDSLVSPPPPAHP 706
           S LD+ P  A   +PG +  +   +     +       +   SG +  V+P PP HP
Sbjct: 46  SPLDMKPDTASLINPGNFSPSGPNSPGSFTAGCHSNLLSTSPSGQNKAVAPYPPNHP 102


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 76  VLTAFQQDSSCHPSEPKSFGSRLAVHCCPHI 168
           VL  FQ++    P EP    +   +HC P +
Sbjct: 325 VLLNFQEERRSEPVEPPRRKNNCPLHCKPEL 355


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 541 MTCNVGFDVAMEXYKMRWN 485
           MT NV  +     YK++WN
Sbjct: 67  MTTNVWVEQEWNDYKLKWN 85


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 541 MTCNVGFDVAMEXYKMRWN 485
           MT NV  +     YK++WN
Sbjct: 80  MTTNVWVEQRWNDYKLKWN 98


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +2

Query: 629 EYDITTQTVFVSGD-DSLVSPPPP 697
           EY  + Q  FV+ D D  + PPPP
Sbjct: 357 EYSPSVQHEFVTFDLDEPLPPPPP 380


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 445 RPLSWNGRKWSGFHSISSYRXPLLHQN 525
           RP   NGR+ S F  +  Y     HQ+
Sbjct: 225 RPKGINGRRASLFCGLQKYTRSFAHQS 251


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 445 RPLSWNGRKWSGFHSISSYRXPLLHQN 525
           RP   NGR+ S F  +  Y     HQ+
Sbjct: 220 RPKGINGRRASLFCGLQKYTRSFAHQS 246


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 253,934
Number of Sequences: 438
Number of extensions: 5713
Number of successful extensions: 19
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)