Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_G22
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...   114   2e-26
SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    96   5e-21
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    30   0.36 
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    29   0.62 
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c...    28   1.9  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   4.4  
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce...    27   4.4  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    26   7.6  
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr...    26   7.6  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    26   7.6  
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|...    26   7.6  
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb...    26   7.6  

>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score =  114 bits (274), Expect = 2e-26
 Identities = 57/71 (80%), Positives = 60/71 (84%)
 Frame = +2

Query: 443 AVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 622
           A   ISKKRKFV DGVF AELNEF TREL+E+GYSG EVRVTP RSEIII AT TQ VLG
Sbjct: 3   AAFTISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLG 62

Query: 623 EKGRRIRELTS 655
           EKGRRIRELT+
Sbjct: 63  EKGRRIRELTA 73



 Score = 76.6 bits (180), Expect = 4e-15
 Identities = 36/51 (70%), Positives = 40/51 (78%)
 Frame = +3

Query: 657 VVQKRFNIPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGXLAVRRACYGV 809
           +VQKRF   E +V LYAEKV  RGLCA+AQ ESLRYKL+  LAVRRA YGV
Sbjct: 74  LVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAYGV 124


>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 96.3 bits (229), Expect = 5e-21
 Identities = 51/113 (45%), Positives = 76/113 (67%), Gaps = 1/113 (0%)
 Frame = +2

Query: 86  MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQ-GDIQIEGFNPSAEEADEGTD 262
           M +YKD+I+GDE+ SD Y +K VD+++YE   ++VT  Q GD+ I G NPSAE+A+E  +
Sbjct: 1   MLLYKDVISGDELVSDAYDLKEVDDIVYEADCQMVTVKQGGDVDI-GANPSAEDAEENAE 59

Query: 263 SAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEGKAPDQVLFF 421
              E+  ++V + RL  T +F DKKSY  Y+K YMK + A+L+   P++V  F
Sbjct: 60  EGTETVNNLVYSFRLSPT-SF-DKKSYMSYIKGYMKAIKARLQESNPERVPVF 110


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +2

Query: 281 VDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEGKAPDQV 412
           +D V  ++L+E   F ++K  T+YLK   + L  K +G  PD V
Sbjct: 89  IDEVSLNKLIEKVGFHNRK--TIYLKQMARILSEKFQGDIPDTV 130


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -2

Query: 145 HFVSVREHLITSDNVLIDLHFDGLEAIKNNKNRKNGFSPQTN 20
           +F  + + L T +  LI   +  +E+IK  KNR +GF   TN
Sbjct: 503 YFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGFVAYTN 544


>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
 Frame = +3

Query: 519 LGSWPRTATPAWKCGSLPSARRSLLWP------PGHRVCSERKDAESVSSLP 656
           L S+P     AW+   LPS R+  L P      P  R+  ++K A  +SS+P
Sbjct: 8   LRSFPSVQRTAWQRLVLPSTRKFSLTPTTFDKTPSGRIPPDQKAANIISSVP 59


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -3

Query: 123  ISSPVIMSL*IFILMDWRRLKII 55
            ISSP I  + IFILM+  RL +I
Sbjct: 1220 ISSPTIFVINIFILMNQERLNLI 1242


>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +2

Query: 188 VTRAQGDIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGD 331
           +T   G  Q + F PS  E +E TD+ ++  V  ++    V    F D
Sbjct: 6   LTEVWGKPQKDIFFPSGSEVEESTDAPIQRTVQPIVTGSSVLALKFAD 53


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = +3

Query: 507 MSSSLGSWPRTATPAWKCGSLPSARRSLLWPPGHRVCSERKDAESVSSLPVVQKRFNIPE 686
           MS +L + P   T AW   +  S     +  P  ++ S  +DAES + LP   K    P 
Sbjct: 1   MSETLNTPP---TYAWVLKAFSSKLAGTVTKPVTKMSSYIEDAESDAELPQDAKEDLRPT 57

Query: 687 QSVXLYAEKVATRGL 731
           +++     K A  G+
Sbjct: 58  ETLTPLKSKAAQNGI 72


>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 713 GGYSWPLRYRPGRISKIQAYRXSRCTSCLL 802
           GG   P RYRPG ++  +  R  + T  L+
Sbjct: 34  GGVKKPHRYRPGTVALREIRRYQKSTELLI 63


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 301 VVQDYVNSALDGRVRALVSLFSRRIKTLDLDIT 203
           V++D +NS LDG +  +    S R +T  LD++
Sbjct: 341 VLEDQMNSLLDGSLYGICRPLSSRAQTSVLDLS 373


>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 713 GGYSWPLRYRPGRISKIQAYRXSRCTSCLL 802
           GG   P RYRPG ++  +  R  + T  L+
Sbjct: 34  GGVKKPHRYRPGTVALREIRRYQKSTELLI 63


>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 136

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 713 GGYSWPLRYRPGRISKIQAYRXSRCTSCLL 802
           GG   P RYRPG ++  +  R  + T  L+
Sbjct: 34  GGVKKPHRYRPGTVALREIRRYQKSTELLI 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,408,265
Number of Sequences: 5004
Number of extensions: 70825
Number of successful extensions: 176
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)