Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_G10
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    32   0.12 
SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein Smd2|Schizosaccharo...    31   0.15 
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    30   0.47 
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    28   1.4  
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    28   1.4  
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    28   1.9  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    27   2.5  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   2.5  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    27   3.3  
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch...    27   3.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.4  
SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom...    26   5.8  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    26   5.8  
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    26   7.6  
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    26   7.6  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
 Frame = -2

Query: 821 PGPXTLGXPKXRHPRSRPTQSARPGRTASTVRRPADGXRQAARPRXQHG------PPRLE 660
           P   +   P    P SR + +A           P    R   +P   +G      PP   
Sbjct: 282 PAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPP 341

Query: 659 PPRSNYSFAGAPFPPRAKLATPP 591
           PPRSN +    P PP+ + A PP
Sbjct: 342 PPRSNAA-GSIPLPPQGRSAPPP 363


>SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein
           Smd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 115

 Score = 31.5 bits (68), Expect = 0.15
 Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
 Frame = +2

Query: 185 AEIELKKEKSKERNSGSREVMRELSTSDTTFTLNPDTNE-LATKI---EEHTNLLLENTK 352
           +EIEL + +  E ++G   V+++   +     +N   N+ L  ++   + H+N++LEN K
Sbjct: 13  SEIELARLEEYEFSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVK 72

Query: 353 KM-VELRETLEG--GGAVDGTIRGSRMVPRPD 439
           +M  E + T  G  G A++     S+M  R D
Sbjct: 73  EMWTEKKRTASGKKGKAINKDRFISKMFLRGD 104


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
 Frame = -2

Query: 830 PKQPGPXTLGXPKXRHPRSRPTQSARPGRTAS--TVRRPADGXRQAARPRXQHGPPRLEP 657
           P  P   T   P    P +  T  A P  +++  T + P    +  ARP+  + PP    
Sbjct: 71  PYPPARPTSQRPNSWQPGNASTMYASPPPSSNYNTAKPPYQTSQFYARPQSSYAPPPSGR 130

Query: 656 PRSNYSFAGAPFPP 615
           PR +Y     P+PP
Sbjct: 131 PRISY-----PYPP 139



 Score = 27.9 bits (59), Expect = 1.9
 Identities = 33/121 (27%), Positives = 44/121 (36%), Gaps = 11/121 (9%)
 Frame = -2

Query: 776 SRPTQSARPGRTASTV----RRPADGXRQAARPRXQHGPPRLEPPRSNYSFAGAPFP--- 618
           SRP  S+  G   S       RP      + +P          PP SNY+ A  P+    
Sbjct: 55  SRPVSSSGSGNAYSQAPYPPARPTSQRPNSWQPGNASTMYASPPPSSNYNTAKPPYQTSQ 114

Query: 617 ----PRAKLATPPVIGSERLRLQVPGWRPGEQARRLEGDSAVSSDRPDRDRALRTSQRRD 450
               P++  A PP   S R R+  P + PG    +        S RP    A R  +  D
Sbjct: 115 FYARPQSSYAPPP---SGRPRISYP-YPPGYMCYKCHNTGYKDSGRPCGRCARRFGRSYD 170

Query: 449 V 447
           V
Sbjct: 171 V 171


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 9/76 (11%)
 Frame = +2

Query: 179 KEAEIELKKEK--SKERNS-GSREVMREL--STSDTTFTLNPD-TNELATK---IEEHTN 331
           K+ ++ L  E   SKE+ +   R+  R++  S +D   +L+ D  +E+A K   I+    
Sbjct: 538 KQTKVSLMSENLSSKEKTAVPPRQKSRDIIASVTDVISSLDKDFQDEMAAKQSMIDSAYT 597

Query: 332 LLLENTKKMVELRETL 379
            L E+TKK+ +LRE L
Sbjct: 598 QLRESTKKLSDLREQL 613


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 11/124 (8%)
 Frame = +2

Query: 44  NYASRTAEAKACLVKGKMNLNNSRN----LK-------TDIKSEVAGALDRIYQLVKEAE 190
           NY SR    ++ L K    L++S++    LK       T  K+E+    +++++   EAE
Sbjct: 225 NYLSRIEMLESSLAKSNSLLDSSKSEMEALKAKSISDATKHKNEIFQLEEKLHEASHEAE 284

Query: 191 IELKKEKSKERNSGSREVMRELSTSDTTFTLNPDTNELATKIEEHTNLLLENTKKMVELR 370
           I +KK    E        ++EL  ++ T + NP+  +    ++E        T+ +VEL 
Sbjct: 285 ISIKKLNDAENR------IKELE-NNPTLSFNPELEKNLKLMQELIVAESSKTQHIVELE 337

Query: 371 ETLE 382
             ++
Sbjct: 338 SCID 341


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +2

Query: 95  MNLNNSRNLKTDIKS--EVAGALDRIYQLVKEAEIELKKEKSK 217
           ++ NN +  K D+K   E+A    + Y+L +E+ I  KK K+K
Sbjct: 25  VHTNNCKPSKEDVKKQPEIALLYKQYYELKRESSITPKKAKTK 67


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
            subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 340  QQQVCMFLDFSRQFIRVWVQCKCC 269
            Q+QV    D   +F R+W QC+ C
Sbjct: 1020 QRQVAQVNDLEVRFARLWTQCQRC 1043


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1060

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 408  YGAPVWCHALTRKNVAALRRPQRAIAVRAIRG 503
            YG    C  LT +N++A  R Q   AVR + G
Sbjct: 1011 YGPSFICKLLTHENISASHRQQLQSAVRNVLG 1042


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
 Frame = +2

Query: 125 TDIKSEVAGA----LDRIYQLVKEAEIELKKEKSKERNS 229
           +DIK E   A    L +IY+L KE  IE+K+E  K ++S
Sbjct: 142 SDIKLEQLSAKLNELHQIYRLRKEKNIEIKEELKKLQDS 180


>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 388

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
 Frame = +1

Query: 85  QRQNESEQLPKFKNRY*ERSG---WSTGPNIPAG*RGRDRTQKRKIEREEQRKPRGDAGT 255
           +++ E   +PK KNR  +R+    W       A    +  T++R I  E QRK       
Sbjct: 283 EKELEEVDIPKRKNRRGQRARQAIWEKKYGKGANHLIKKATEERSIREERQRKYEERQAK 342

Query: 256 VYLRHNIYTE 285
              R N +TE
Sbjct: 343 RAARENAFTE 352


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 27/117 (23%), Positives = 39/117 (33%)
 Frame = -2

Query: 764  QSARPGRTASTVRRPADGXRQAARPRXQHGPPRLEPPRSNYSFAGAPFPPRAKLATPPVI 585
            +S  P   A  V  PA        P    G P   PP    + AG P PP      PP +
Sbjct: 730  KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP----PPPPAV 785

Query: 584  GSERLRLQVPGWRPGEQARRLEGDSAVSSDRPDRDRALRTSQRRDVLAGQGVAPYGS 414
             +   R   P     E   +++  S     +   + A +  +  D  A   +  Y S
Sbjct: 786  SAGGSRYYAPA-PQAEPEPKIDETSLTEEQKIQLEEARKQRKAADDAARAAIEKYTS 841


>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 341

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 290 DTNELATKIEEHTNLLLENTKKMVELRETLEG-GGAVDGTIRGSRMVPRPD 439
           +T EL    EE     L + +   + + T+ G  GA++GTI G   +P+PD
Sbjct: 22  ETKELMLNNEES----LSDWRNYFDEKLTIPGESGALNGTINGYLTLPQPD 68


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 163 SVQCSSHFALNICF*ISGVVQIHF-AFDEAGLRFRC 59
           S+ C S FA N+C  ++G + + F    E G R++C
Sbjct: 489 SITCGSSFADNVCVAVAGGLILFFEGITEVG-RYQC 523


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +2

Query: 233 SREVMRELSTSDTTFTLNPDTNELATKIEEHTNLLLENTKKMVELRET 376
           +REV +E+   + T  +  + ++ A KIEE  +   +  KK  +++ET
Sbjct: 211 TREVEKEVPEEEETEEVKNEEDDKAPKIEEVDDESEKKEKKTKKVKET 258


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 15/68 (22%), Positives = 34/68 (50%)
 Frame = +2

Query: 176 VKEAEIELKKEKSKERNSGSREVMRELSTSDTTFTLNPDTNELATKIEEHTNLLLENTKK 355
           + + E+EL+  K +E++     V  +  +SD       +TNE  +K++   +L      K
Sbjct: 9   ISDHEVELQDAKPEEKSENGNFVFEKAFSSDEEKGSGYNTNETYSKMD--NSLQHRGVSK 66

Query: 356 MVELRETL 379
           +  +R+++
Sbjct: 67  IEAVRDSI 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,025,139
Number of Sequences: 5004
Number of extensions: 58900
Number of successful extensions: 284
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)