Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_G04
(1004 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93379-3|CAB07590.1| 282|Caenorhabditis elegans Hypothetical pr... 32 0.56
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 30 3.0
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 30 3.0
U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical pr... 30 3.0
U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical pr... 30 3.0
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 5.2
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 5.2
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 6.9
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 6.9
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 6.9
U40420-3|AAK84527.2| 232|Caenorhabditis elegans Prion-like-(q/n... 28 9.1
AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical... 28 9.1
>Z93379-3|CAB07590.1| 282|Caenorhabditis elegans Hypothetical protein
F21H7.4 protein.
Length = 282
Score = 32.3 bits (70), Expect = 0.56
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = -2
Query: 1003 PPPXPENPXXXPHPPXQXXPPPXKXNGKTRXPRPN 899
PP P P PH P + P P G R RPN
Sbjct: 79 PPHRPHRPPHRPHRPPRPPPRPECDEGWLRFERPN 113
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 29.9 bits (64), Expect = 3.0
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -2
Query: 1000 PPXPENPXXXPHPPXQXXPPPXKXNGKTRXPRPN 899
PP P +P PH P P P + TR PRP+
Sbjct: 86 PPGPPHPSGPPHRPH---PHPSRRPRPTRLPRPS 116
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 29.9 bits (64), Expect = 3.0
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 1003 PPPXPENPXXXPHPPXQXXPPP 938
PPP P P P PP PPP
Sbjct: 132 PPPPPPPPHYPPPPPHYPPPPP 153
>U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical protein
R144.4a protein.
Length = 360
Score = 29.9 bits (64), Expect = 3.0
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 1003 PPPXPENPXXXPHPPXQXXPPP 938
PPP P P P PP PPP
Sbjct: 3 PPPPPPPPPPPPPPPAASAPPP 24
Score = 29.1 bits (62), Expect = 5.2
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = -2
Query: 1003 PPPXPENPXXXPHPPXQXXPPPXKXNGK 920
PPP P P P PP PP N +
Sbjct: 2 PPPPPPPPPPPPPPPPAASAPPPSSNAR 29
>U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical protein
R144.4b protein.
Length = 362
Score = 29.9 bits (64), Expect = 3.0
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 1003 PPPXPENPXXXPHPPXQXXPPP 938
PPP P P P PP PPP
Sbjct: 3 PPPPPPPPPPPPPPPAASAPPP 24
Score = 29.1 bits (62), Expect = 5.2
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = -2
Query: 1003 PPPXPENPXXXPHPPXQXXPPPXKXNGK 920
PPP P P P PP PP N +
Sbjct: 2 PPPPPPPPPPPPPPPPAASAPPPSSNAR 29
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein
C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 5.2
Identities = 14/37 (37%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Frame = -2
Query: 1003 PPPXPENPXXXPHPP-----XQXXPPPXKXNGKTRXP 908
PPP P P P PP PPP G+T P
Sbjct: 274 PPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGP 310
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding
protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 5.2
Identities = 14/37 (37%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Frame = -2
Query: 1003 PPPXPENPXXXPHPP-----XQXXPPPXKXNGKTRXP 908
PPP P P P PP PPP G+T P
Sbjct: 284 PPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGP 320
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.7 bits (61), Expect = 6.9
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = -2
Query: 1003 PPPXPENPXXXPHPPXQXXPPPXKXNGKTRXPRP 902
PPP P P P PP PPP G P P
Sbjct: 758 PPPPPPPPGGCPPPP--PPPPPGGFKGGPPPPPP 789
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.7 bits (61), Expect = 6.9
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = -2
Query: 1003 PPPXPENPXXXPHPPXQXXPPPXKXNGKTRXPRP 902
PPP P P P PP PPP G P P
Sbjct: 758 PPPPPPPPGGCPPPP--PPPPPGGFKGGPPPPPP 789
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.7 bits (61), Expect = 6.9
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = -2
Query: 1003 PPPXPENPXXXPHPPXQXXPPPXKXNGKTRXPRP 902
PPP P P P PP PPP G P P
Sbjct: 341 PPPPPPPPGGCPPPP--PPPPPGGFKGGPPPPPP 372
>U40420-3|AAK84527.2| 232|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 37
protein.
Length = 232
Score = 28.3 bits (60), Expect = 9.1
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 945 GXXWXGGWGXXXGFSGXGGG 1004
G W GGWG G GGG
Sbjct: 94 GNGWQGGWGSNGNGQGNGGG 113
>AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical
protein Y116A8C.35 protein.
Length = 285
Score = 28.3 bits (60), Expect = 9.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 939 GGGXXWXGGWGXXXGFSGXGGG 1004
GGG GG+G G+ G GGG
Sbjct: 218 GGGGGGGGGYGSGGGWGGGGGG 239
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,543,181
Number of Sequences: 27780
Number of extensions: 303812
Number of successful extensions: 1664
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1480
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2636483976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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