Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_G03
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    78   2e-15
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    29   0.87 
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces...    27   2.7  
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ...    27   4.6  
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    27   4.6  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    26   6.1  

>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 77.8 bits (183), Expect = 2e-15
 Identities = 45/126 (35%), Positives = 64/126 (50%), Gaps = 5/126 (3%)
 Frame = +3

Query: 408 ADVISVLAMGVSGTLEVAEKRECLKYCLLGTLSNVGDWGHEYVRQLEGEIAEEWNIEN-- 581
           AD++SVL M  S T     K E LKY L G  ++   WGHEYVR L  EI EE+      
Sbjct: 124 ADILSVLGMSYSNT----SKHESLKYRLQGVTTDPSLWGHEYVRHLASEIEEEFASRQEE 179

Query: 582 ---MDSLLPLVRDVITFDMKHSAEIQACDLLMEIDRLDLLTPHMDQSHYPXVXLYXIGCA 752
               D L+ L   ++ F + H+AE  A DLL E+  ++ + P ++  +   V LY   C 
Sbjct: 180 EAPTDDLMELALTIVPFFLTHNAEADAIDLLQELGAIEKVVPFVELDNASRVCLYITSCV 239

Query: 753 SXVVEP 770
           + +  P
Sbjct: 240 NLLPFP 245



 Score = 70.9 bits (166), Expect = 2e-13
 Identities = 34/69 (49%), Positives = 48/69 (69%)
 Frame = +2

Query: 167 DDLSEEDKRLQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLREH 346
           +DLSEED +L+ +L +LV  +     +L   +L  L  +IRTST+SMT+VPKPLKFLR H
Sbjct: 44  EDLSEEDLQLKNDLELLVQAVQDATPELVGSSLTQLKEIIRTSTSSMTAVPKPLKFLRPH 103

Query: 347 YPALKQVYE 373
           Y  L ++Y+
Sbjct: 104 YFTLVKIYD 112


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 16/53 (30%), Positives = 30/53 (56%)
 Frame = +2

Query: 179  EEDKRLQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFL 337
            EE + LQEE+N++  K L + V+ Y   L M+ +L   + +S++   +   +L
Sbjct: 1609 EETEWLQEEVNIMKIKELTSTVNKYREQLAMVQSLNEHAESSLSKAERSKNYL 1661


>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 524 SPITYI*QCSQKTILQTLSLFCNFQSTAYAHR 429
           SP+TY+   S ++ILQTL        T Y +R
Sbjct: 325 SPVTYMISVSARSILQTLLAVAFLGETLYGNR 356


>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 448

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 176 KDHHLEPLRAQLFPSLALQFY 114
           +DH L+P R+ LF SL L  Y
Sbjct: 222 QDHELKPKRSGLFSSLCLPIY 242


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +2

Query: 218 VDKLLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLREHYPALKQVYEKNY 382
           V   +G+E  L  P+   + + + T++ S + V  PL+  R    A+   Y  NY
Sbjct: 305 VPSSMGSEATLNMPSTYGIDSNLYTNSNSSSIVQNPLQPARTGPAAINYNYTTNY 359


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 550 PSNCLTYSCPQSPTFDNVPRRQYFKHSLFSATSRVPLTP 434
           P+N    +  +SPT   VP  +Y  +S+  A    PL P
Sbjct: 450 PNNYEVSTIMRSPTISTVPPPKYLSNSINGAKFLNPLAP 488


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,570
Number of Sequences: 5004
Number of extensions: 53196
Number of successful extensions: 155
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)