Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_G03
(875 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1276 - 28907726-28907842,28908012-28908062,28908146-289082... 113 2e-25
02_01_0356 + 2563773-2563898,2564031-2564131,2564375-2564498,256... 112 3e-25
09_02_0460 + 9567656-9567766,9567849-9567949,9568527-9568647,956... 68 1e-11
07_01_0071 - 522920-523063,524125-524212,524289-524677 31 0.92
06_03_1248 + 28685911-28687719 29 3.7
03_06_0010 + 30990002-30990273,30990372-30990488,30990581-309906... 29 6.5
01_06_1015 + 33819203-33821827 28 8.5
>06_03_1276 -
28907726-28907842,28908012-28908062,28908146-28908254,
28908345-28908430,28908537-28908650,28908731-28908790,
28909088-28909303,28909401-28909514,28910632-28910853,
28910946-28911050,28911136-28911276,28911368-28911472,
28911538-28911645,28911753-28911911,28912060-28912140,
28912219-28912330,28912433-28912515,28912631-28912669,
28913061-28913126,28913601-28913643,28913969-28914036,
28914264-28914323,28914409-28914529,28915167-28915267,
28915354-28915494
Length = 873
Score = 113 bits (271), Expect = 2e-25
Identities = 56/140 (40%), Positives = 85/140 (60%), Gaps = 5/140 (3%)
Frame = +3
Query: 366 YMKKITDEKTKKFCADVISVLAMGVSGTLEVAEKRECLKYCLLGTLSNVGDWGHEYVRQL 545
Y + + + KK+ AD++SVLA+ T+ +RE L Y ++G+ ++G WGHEYVR L
Sbjct: 111 YFETMPESDLKKYMADILSVLAL----TMSAEGERESLNYRMIGSEGDIGSWGHEYVRNL 166
Query: 546 EGEIAEEWNIEN-----MDSLLPLVRDVITFDMKHSAEIQACDLLMEIDRLDLLTPHMDQ 710
GEIA+E+ DSL LV +++F MKH+AE +A DLLME+++LDLL H+D
Sbjct: 167 AGEIAQEFQKRQDDGMPTDSLKELVEQIVSFHMKHNAEPEAVDLLMEVEKLDLLVKHVDS 226
Query: 711 SHYPXVXLYXIGCASXVVEP 770
++Y LY + + P
Sbjct: 227 TNYKRTCLYLTSSSKYLPAP 246
Score = 68.9 bits (161), Expect = 5e-12
Identities = 34/69 (49%), Positives = 47/69 (68%)
Frame = +2
Query: 167 DDLSEEDKRLQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLREH 346
DDLSEED+ L+E+L + V + + + AL+ + IR++T+SMTSVPKPLKFLR H
Sbjct: 45 DDLSEEDQALKEQLELYVVRAQDTDPGVQKLALESMRQEIRSATSSMTSVPKPLKFLRPH 104
Query: 347 YPALKQVYE 373
Y LK +E
Sbjct: 105 YGTLKAYFE 113
>02_01_0356 +
2563773-2563898,2564031-2564131,2564375-2564498,
2564592-2564651,2564762-2564829,2565520-2565562,
2566026-2566091,2566237-2566275,2566375-2566457,
2566654-2566765,2566840-2566923,2567026-2567184,
2567268-2567372,2567451-2567555,2567661-2567801,
2567920-2568024,2568111-2568335,2568762-2568875,
2568963-2569178,2569674-2569733,2569827-2569940,
2570047-2570132,2570211-2570319,2570408-2570586,
2570673-2570741,2570792-2571005
Length = 968
Score = 112 bits (270), Expect = 3e-25
Identities = 56/130 (43%), Positives = 84/130 (64%), Gaps = 5/130 (3%)
Frame = +3
Query: 396 KKFCADVISVLAMGVSGTLEVAEKRECLKYCLLGTLSNVGDWGHEYVRQLEGEIAEEWNI 575
K++ AD++SVLA+ T+ +RE LKY LLG+ ++G WGHEYVR L GEIA+E+
Sbjct: 117 KRYMADILSVLAL----TMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEFQK 172
Query: 576 EN-----MDSLLPLVRDVITFDMKHSAEIQACDLLMEIDRLDLLTPHMDQSHYPXVXLYX 740
+D+L+ LV+ +++F MKH+AE +A DLLME++ LDLL H+D ++Y LY
Sbjct: 173 RQDDDMPIDALMELVQQIVSFHMKHNAEPEAVDLLMEVEDLDLLVEHVDSTNYKRTCLYL 232
Query: 741 IGCASXVVEP 770
+ + P
Sbjct: 233 TSSSKYLPAP 242
Score = 67.3 bits (157), Expect = 2e-11
Identities = 34/69 (49%), Positives = 46/69 (66%)
Frame = +2
Query: 167 DDLSEEDKRLQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLREH 346
DDLSEED L+E+L + V + + + AL+ + IR++T+SMTSVPKPLKFLR H
Sbjct: 40 DDLSEEDLALKEQLELYVVRAQDADPGVQKLALESMRQEIRSATSSMTSVPKPLKFLRPH 99
Query: 347 YPALKQVYE 373
Y LK +E
Sbjct: 100 YGTLKSYFE 108
>09_02_0460 +
9567656-9567766,9567849-9567949,9568527-9568647,
9568733-9568792,9569022-9569089,9569469-9569535,
9569586-9569666,9570152-9570217,9570372-9570410,
9570527-9570609,9570712-9570823,9570902-9570982,
9571132-9571290,9571397-9571504,9571570-9571674,
9571765-9571905,9572007-9572147,9572205-9572426,
9573617-9573730,9573830-9574045,9574373-9574432,
9574513-9574626,9574735-9574820,9574904-9575012,
9575099-9575277,9575357-9575429
Length = 938
Score = 67.7 bits (158), Expect = 1e-11
Identities = 34/69 (49%), Positives = 47/69 (68%)
Frame = +2
Query: 167 DDLSEEDKRLQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLREH 346
DDLSEED+ L+E+L + V + + + AL+ + IR++T+SMTSVPKPLKFLR H
Sbjct: 35 DDLSEEDQALKEQLELYVVRAQDPDPGVQKLALESMRQEIRSATSSMTSVPKPLKFLRPH 94
Query: 347 YPALKQVYE 373
Y LK +E
Sbjct: 95 YGILKAYFE 103
Score = 66.5 bits (155), Expect = 3e-11
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Frame = +3
Query: 537 RQLEGEIAEEWNIEN-----MDSLLPLVRDVITFDMKHSAEIQACDLLMEIDRLDLLTPH 701
R L GEIA+E+ DSL LV +++F MKH+AE +A DLLME+++LDLL H
Sbjct: 189 RNLAGEIAQEFQKRQDDGMTTDSLKELVEQIVSFHMKHNAEPEAVDLLMEVEKLDLLVKH 248
Query: 702 MDQSHYPXVXLYXIGCASXVVEP 770
+D ++Y LY + + P
Sbjct: 249 VDSTNYKRTCLYLTSSSKYLPAP 271
Score = 56.8 bits (131), Expect = 2e-08
Identities = 28/70 (40%), Positives = 46/70 (65%)
Frame = +3
Query: 366 YMKKITDEKTKKFCADVISVLAMGVSGTLEVAEKRECLKYCLLGTLSNVGDWGHEYVRQL 545
Y + + + + KK+ AD++SVLA+ T+ +RE LKY ++G+ ++G WGHEYVR L
Sbjct: 101 YFETMPESELKKYMADILSVLAL----TMSAEGERESLKYRMIGSEGDIGSWGHEYVR-L 155
Query: 546 EGEIAEEWNI 575
EI E+++
Sbjct: 156 YLEITLEFSV 165
>07_01_0071 - 522920-523063,524125-524212,524289-524677
Length = 206
Score = 31.5 bits (68), Expect = 0.92
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 432 MGVSGTLEVAEKRECLKYCLLGTLSNVGDWG-HEYVRQLEGEIAEE 566
M V L+V + KYCLLG LS W H+ +R+LE + E+
Sbjct: 123 MVVPDALKVLRLQPGHKYCLLGQLSKEVGWNYHDTIRELEEKRKEK 168
>06_03_1248 + 28685911-28687719
Length = 602
Score = 29.5 bits (63), Expect = 3.7
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -2
Query: 577 SIFHSSAISPSNC-LTYSCPQSPTFDNVPRRQYFKHSLFSATSRVPLTP 434
S+ SS+ SPS+ L S P S PRR K SA S P+TP
Sbjct: 58 SLHSSSSSSPSSSSLLSSSPSSKGTGTTPRRSADKAPSASAASSRPITP 106
>03_06_0010 +
30990002-30990273,30990372-30990488,30990581-30990668,
30991505-30991648
Length = 206
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 432 MGVSGTLEVAEKRECLKYCLLGTLSNVGDWG-HEYVRQLEGEIAEE 566
M + L+V + KYCLLG LS W ++ +R+LE + E+
Sbjct: 123 MVIPDALKVLRLQPGHKYCLLGQLSKEVGWNYYDTIRELEEKRKEK 168
>01_06_1015 + 33819203-33821827
Length = 874
Score = 28.3 bits (60), Expect = 8.5
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +3
Query: 549 GEIAEEW--NIENMDSLLPLVRDVITFDMKHSAEIQACDLLMEIDRLDLLTPHMDQSH 716
G + W N+E + SLL V+DV++F I C L I + P+++ H
Sbjct: 706 GNLHNLWISNLERLSSLLEGVKDVVSFSCLKHLLIDCCPNLKWIFPSMVCLPNLETMH 763
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,452,736
Number of Sequences: 37544
Number of extensions: 308534
Number of successful extensions: 709
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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