Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_G01
         (876 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39852-2|AAK39257.1|  208|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U29381-5|AAA68753.2|  229|Caenorhabditis elegans Hypothetical pr...    29   3.3  

>U39852-2|AAK39257.1|  208|Caenorhabditis elegans Hypothetical
           protein K10C2.2 protein.
          Length = 208

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +1

Query: 544 PY*WLVVAIVILLSTRGTAVSDIWVHALXRTAGGAKLPSAGIMPERL*GR 693
           PY  ++V + I+++TR   V  IW + + R   G KL   G+  E+  GR
Sbjct: 147 PYDIVLVILCIIITTRLVVVLVIWTNCVYRI--GEKLSELGMFLEKCNGR 194


>U29381-5|AAA68753.2|  229|Caenorhabditis elegans Hypothetical
           protein F35D11.7 protein.
          Length = 229

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 614 GFMHSAERPVARNYHPRELCLNASKAEXQPNRIR 715
           GF H    P ARN H ++ CL   + +   NR R
Sbjct: 22  GFSHVKRVPTARNNHTKDWCLGVFQFKNMGNRDR 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,454,418
Number of Sequences: 27780
Number of extensions: 404357
Number of successful extensions: 931
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)