Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_F24
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    28   1.6  
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c...    27   4.8  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   6.3  

>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 545 YICQRITQVS*GQL--SEDRNLAWSKRAKAGLIQMFSTHRDCESTXY 679
           Y+C  +  +S G L  SED ++ W    K GLI+ F    + E+  Y
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIKDVNWENLDY 173


>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 279

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = -2

Query: 813 ASNDRRPTSKIKKQRRYERLAATSQYPCGNFSGTSC*KLFILKDR*XVLSQSLCVLNI 640
           +S+ R  T  +K  RRY  +  +   PC       C + F   DR   +   LC+ ++
Sbjct: 198 SSSPRNMTEFLKHARRYISMQLSETSPCLGQECIICFEEFAAGDRVARIEYCLCIFHL 255


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 718 WHLLLKTLYTKGSIXRAFAVPMRTEH 641
           +H + + L   GSI   FAVP++ EH
Sbjct: 398 FHGIAELLEILGSIINGFAVPLKEEH 423


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,703,215
Number of Sequences: 5004
Number of extensions: 77747
Number of successful extensions: 192
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)