Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_F23
         (925 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    27   3.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   8.6  
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    26   8.6  

>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 152 GRCADTTRQPICALLRSCI-TQFLLCIIKCNKIG 54
           GR  +  R+    LLRS   TQ LLC +KC  +G
Sbjct: 702 GRMNNRAREKSLDLLRSDSGTQVLLCSLKCGALG 735


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 139  SAQRPRPSAPDRYKNWGSVNEPRDRASI 222
            +A   RPSAP+R  ++GSV+   + +SI
Sbjct: 1392 NAVNARPSAPERRDSFGSVSSGSNVSSI 1419


>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 339 FRDELPAPRRRRNPRIKAIF 280
           F + +PAP RRR P+  A F
Sbjct: 435 FAEHMPAPARRRRPQSTASF 454


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,323,464
Number of Sequences: 5004
Number of extensions: 67365
Number of successful extensions: 151
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)