Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_F23
         (925 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0260 - 11200887-11200907,11200979-11201961,11212201-11212390     30   2.3  
03_01_0309 - 2432395-2433271,2433494-2434495,2434538-2435073,243...    29   3.9  
02_05_0056 + 25461423-25461708,25461986-25462026,25466047-254660...    29   6.9  
02_04_0639 + 24662786-24663451                                         29   6.9  

>05_03_0260 - 11200887-11200907,11200979-11201961,11212201-11212390
          Length = 397

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 461 DASVALLSYDRTPTCFWVEVVLRACCAYPRMY 366
           +A+ A+L   +T   FWVE V  AC A  R+Y
Sbjct: 133 EAARAMLDEYKTSDVFWVEAVSTACHAINRLY 164


>03_01_0309 -
           2432395-2433271,2433494-2434495,2434538-2435073,
           2435579-2435716,2436050-2436148,2436278-2436346,
           2436968-2437063
          Length = 938

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = +2

Query: 404 PQPRNKLVFDHMTTKRRKRPCSVCKAPGALVSIGRSVD*RAQIIQVSLC 550
           P+P    + +++ TK+RK P  +C+     VS+   V+ + + +   +C
Sbjct: 840 PEPEKVSITNYVKTKKRKMPDGICEGMPENVSVTNDVETKKRKMPDRIC 888


>02_05_0056 +
           25461423-25461708,25461986-25462026,25466047-25466083,
           25466451-25466594,25466882-25466974,25467067-25467155,
           25467241-25467537,25467629-25467765,25467860-25467952,
           25468061-25468166,25468243-25468395
          Length = 491

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 646 GYVSSYAIHEHTLLYWYFYGQAHCDRK 726
           GYV+    H   L YW+F   A  D+K
Sbjct: 61  GYVTVNETHGRALFYWFFEATAAADKK 87


>02_04_0639 + 24662786-24663451
          Length = 221

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = +1

Query: 439 DNKATEASVLRV*GARGTSIDRSVGRLTCSNHSGFSVSLKEPEHTAATVGCAAR 600
           D K+ E SV  V G  G   DR +GR T       +V +KEP     +V C  R
Sbjct: 43  DGKSAEFSVA-VAGVSGLDPDRDLGRPTLDPTFDLTVRIKEPRR--YSVACVER 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,576,631
Number of Sequences: 37544
Number of extensions: 481071
Number of successful extensions: 1234
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1234
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)