Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_F20
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.089
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   0.35 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    28   0.45 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.65 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    24   0.91 
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    24   5.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect(2) = 0.089
 Identities = 14/47 (29%), Positives = 14/47 (29%)
 Frame = -3

Query: 687 PXPPPPXXXXXXXXXXXXXXXXXXXXXXXPPPPPXXXXKKXXPPPPP 547
           P PPP                        PPPPP        PPPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 28.7 bits (61), Expect = 1.1
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -3

Query: 600 PPPPPXXXXKKXXPPPPP 547
           PPPPP        PPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPP 780



 Score = 28.7 bits (61), Expect = 1.1
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -3

Query: 600 PPPPPXXXXKKXXPPPPP 547
           PPPPP        PPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPP 781



 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -1

Query: 836 GXXPPPPPPPXXXXXXXXXXXPP 768
           G  PPPPPPP           PP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/51 (29%), Positives = 15/51 (29%), Gaps = 4/51 (7%)
 Frame = -3

Query: 687 PXPPPPXXXXXXXXXXXXXXXXXXXXXXXPPPPPXXXXKKXX----PPPPP 547
           P PPPP                       PPPPP            PPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 21.0 bits (42), Expect(2) = 0.089
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -3

Query: 825 PPPPPP 808
           PPPPPP
Sbjct: 732 PPPPPP 737


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect(2) = 0.35
 Identities = 14/47 (29%), Positives = 14/47 (29%)
 Frame = -1

Query: 689 PPXPPPPXXXXXXXXXXXXXXXXXXXXXXXPPPPPXXXXKKXXPPPP 549
           PP PPPP                       PPPPP         PPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAP-----PPPPPRSAPSTGRQPPP 378



 Score = 24.6 bits (51), Expect(2) = 2.8
 Identities = 14/47 (29%), Positives = 14/47 (29%)
 Frame = -1

Query: 689 PPXPPPPXXXXXXXXXXXXXXXXXXXXXXXPPPPPXXXXKKXXPPPP 549
           PP PPPP                       PPPPP        P PP
Sbjct: 311 PPPPPPP--SRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPP 355



 Score = 23.8 bits (49), Expect(2) = 0.35
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 827 PPPPPPP 807
           PPPPPPP
Sbjct: 311 PPPPPPP 317



 Score = 21.0 bits (42), Expect(2) = 2.8
 Identities = 8/20 (40%), Positives = 8/20 (40%)
 Frame = -1

Query: 827 PPPPPPPXXXXXXXXXXXPP 768
           PPP PPP           PP
Sbjct: 253 PPPIPPPSNGTVSSPPNSPP 272


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.9 bits (59), Expect(2) = 0.45
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -1

Query: 839 GGXXPPPPPPP 807
           GG  PPPPPPP
Sbjct: 303 GGLPPPPPPPP 313



 Score = 20.6 bits (41), Expect(2) = 0.45
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -1

Query: 689 PPXPPPP 669
           PP PPPP
Sbjct: 308 PPPPPPP 314


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -3

Query: 600 PPPPPXXXXKKXXPPPPP 547
           PPPPP        PPPPP
Sbjct: 12  PPPPPGFEPPSQPPPPPP 29



 Score = 29.1 bits (62), Expect = 0.86
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -3

Query: 600 PPPPPXXXXKKXXPPPPP 547
           PPPPP        PPPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPP 28



 Score = 26.6 bits (56), Expect(2) = 0.88
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -1

Query: 836 GXXPPPPPPPXXXXXXXXXXXPP 768
           G  PPPPPPP           PP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 26.6 bits (56), Expect = 4.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 600 PPPPPXXXXKKXXPPPPP 547
           PPPPP    +    PPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPP 27



 Score = 26.6 bits (56), Expect = 4.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 600 PPPPPXXXXKKXXPPPPP 547
           PPPP      +  PPPPP
Sbjct: 13  PPPPGFEPPSQPPPPPPP 30



 Score = 20.6 bits (41), Expect(2) = 0.88
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -1

Query: 689 PPXPPPP 669
           PP PPPP
Sbjct: 24  PPPPPPP 30


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.8 bits (49), Expect(2) = 0.91
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 827 PPPPPPP 807
           PPPPPPP
Sbjct: 189 PPPPPPP 195



 Score = 23.8 bits (49), Expect(2) = 5.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 827 PPPPPPP 807
           PPPPPPP
Sbjct: 191 PPPPPPP 197



 Score = 23.4 bits (48), Expect(2) = 0.91
 Identities = 14/50 (28%), Positives = 15/50 (30%), Gaps = 3/50 (6%)
 Frame = -1

Query: 689 PPXPPPPXXXXXXXXXXXXXXXXXXXXXXXPPPPPXXXXKKXXP---PPP 549
           PP PPPP                       P  PP    K+  P   PPP
Sbjct: 191 PPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPP 240



 Score = 20.6 bits (41), Expect(2) = 5.5
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -1

Query: 689 PPXPPPP 669
           PP PPPP
Sbjct: 238 PPPPPPP 244


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 23.8 bits (49), Expect(2) = 5.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 827  PPPPPPP 807
            PPPPPPP
Sbjct: 1095 PPPPPPP 1101



 Score = 20.6 bits (41), Expect(2) = 5.5
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -1

Query: 689  PPXPPPP 669
            PP PPPP
Sbjct: 1096 PPPPPPP 1102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,779,088
Number of Sequences: 5004
Number of extensions: 24641
Number of successful extensions: 356
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)