Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_F18
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   5.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   6.7  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +1

Query: 154 PPXXNPPPPKEXXXXFPPPPPKXF 225
           PP   PPP  E     PPPPP  +
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPGY 32


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +1

Query: 139 PXXXXPPXXNPPPPKEXXXXFPPPPP 216
           P    PP   PPPP       PPPPP
Sbjct: 756 PIMGGPPP--PPPPPGVAGAGPPPPP 779


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/35 (31%), Positives = 13/35 (37%)
 Frame = +1

Query: 136  KPXXXXPPXXNPPPPKEXXXXFPPPPPKXFXPXXP 240
            +P    PP  + P P       PPPP     P  P
Sbjct: 1693 RPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGP 1727



 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = +1

Query: 139  PXXXXPPXXNPPPPKEXXXXFPPPPPKXFXPXXP 240
            P    PP   PP P       PPP P    P  P
Sbjct: 1711 PMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +1

Query: 154  PPXXNPPPPKEXXXXFPPPPPKXFXP 231
            PP   PP PK      P PPP    P
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPP 1218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,231,753
Number of Sequences: 5004
Number of extensions: 12437
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)