Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_F17
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.2  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    28   1.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.3  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -3

Query: 853 PPPPPPPXXXXXXXXXPPP 797
           PPPPPPP         PPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPP 27



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -3

Query: 853 PPPPPPPXXXXXXXXXPPP 797
           PPPPPPP         PPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPP 28


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -3

Query: 853 PPPPPPPXXXXXXXXXPPP 797
           PPPPPPP         PPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPP 779



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -3

Query: 853 PPPPPPPXXXXXXXXXPPP 797
           PPPPPPP         PPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -2

Query: 212 KKIXPRLGPPKRKPEPAPFRV*ENPPGRPXKTPGSRIP 99
           +K  P    PK  PEP    + +  P  P K P S +P
Sbjct: 422 RKPLPTTTSPKVNPEPHSESISDTRPSTPRKVPPSTVP 459


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -2

Query: 851 PPPPPPXXXXXXXXXPPP 798
           PPPPPP         PPP
Sbjct: 361 PPPPPPRSAPSTGRQPPP 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,736,610
Number of Sequences: 5004
Number of extensions: 24100
Number of successful extensions: 217
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)