Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_F12
         (1130 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    35   0.018
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.30 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.2  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    28   2.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   3.3  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   4.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.1 bits (77), Expect = 0.018
 Identities = 19/66 (28%), Positives = 20/66 (30%)
 Frame = -2

Query: 754 PXPPPPXXXXXXXXXXXXXXXXXXXXXXXPPPPXGXXXPXXXXXXXPPXPPPPPXXGGVG 575
           P PPPP                       PPPP     P       PP PPPPP     G
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP--PPPGVAGAGPPPPPPPPPAVSAGG 789

Query: 574 XKXXPP 557
            +   P
Sbjct: 790 SRYYAP 795



 Score = 29.9 bits (64), Expect = 0.68
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +3

Query: 234 PQXLPXGPPXKXXXTPPPPPKXXKXGGXXSPP 329
           P  +P  PP      PPPPP      G   PP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 27.1 bits (57), Expect = 4.8
 Identities = 19/73 (26%), Positives = 20/73 (27%), Gaps = 1/73 (1%)
 Frame = -3

Query: 810 SPXRPPXXXKXXGXXXXPXPXPPPXXXXXXXXXXXXXF-CAGGGGXXXXPPPPRGXXXPX 634
           SP  PP           P P PPP                AG G     PPPP       
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGS 790

Query: 633 LFXLXXPPXXPPP 595
            +    P   P P
Sbjct: 791 RYYAPAPQAEPEP 803



 Score = 26.2 bits (55), Expect = 8.4
 Identities = 11/32 (34%), Positives = 12/32 (37%)
 Frame = +3

Query: 234 PQXLPXGPPXKXXXTPPPPPKXXKXGGXXSPP 329
           P  +P   P      PPPPP      G   PP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 26.2 bits (55), Expect = 8.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 761 GPPPPPPP 738
           GPPPPPPP
Sbjct: 760 GPPPPPPP 767



 Score = 26.2 bits (55), Expect(2) = 0.74
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 761 GPPPPPPP 738
           GPPPPPPP
Sbjct: 774 GPPPPPPP 781



 Score = 21.8 bits (44), Expect(2) = 0.74
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 770 GXXGPPPPPP 741
           G   PPPPPP
Sbjct: 759 GGPPPPPPPP 768


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 31.1 bits (67), Expect = 0.30
 Identities = 19/47 (40%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = +3

Query: 528 GGGGGGXPXXGGXXXXPTPPXXGGGGGXGGXXXK-XXXGXXXPXGGG 665
           G  GGG    GG    P PP  GG GG GG   +    G     GGG
Sbjct: 184 GHNGGGFGGFGGGSGGP-PPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229



 Score = 29.1 bits (62), Expect = 1.2
 Identities = 22/66 (33%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
 Frame = +3

Query: 477 GGGXXXXPPXXFXXPXGGGGGGGXPXXGGXXXXPTPP--XXGGGGGXGGXXXKXXXGXXX 650
           GGG    PP        GG GG     GG       P    GG GG GG       G   
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGG 253

Query: 651 PXGGGG 668
             GG G
Sbjct: 254 FGGGPG 259



 Score = 27.9 bits (59), Expect = 2.8
 Identities = 18/47 (38%), Positives = 18/47 (38%)
 Frame = +3

Query: 477 GGGXXXXPPXXFXXPXGGGGGGGXPXXGGXXXXPTPPXXGGGGGXGG 617
           G G     P  F    GG GGG     GG       P  G GGG GG
Sbjct: 222 GHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGP-GGFGGGPGG 267



 Score = 27.1 bits (57), Expect = 4.8
 Identities = 21/64 (32%), Positives = 21/64 (32%)
 Frame = +3

Query: 477 GGGXXXXPPXXFXXPXGGGGGGGXPXXGGXXXXPTPPXXGGGGGXGGXXXKXXXGXXXPX 656
           GGG           P G GG GG    GG          G GGG GG           P 
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHH-HGGHGGFGGGPGGFEGGPGGFGGGPG 245

Query: 657 GGGG 668
           G GG
Sbjct: 246 GFGG 249



 Score = 27.1 bits (57), Expect = 4.8
 Identities = 18/47 (38%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
 Frame = +3

Query: 480 GGXXXXPPXXFXXPXGGGGGGGXPXXGGXXXXPTPPXXGGG-GGXGG 617
           GG    P      P G GGG G    G       P   GGG GG GG
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 14/41 (34%), Positives = 16/41 (39%)
 Frame = +3

Query: 255 PPXKXXXTPPPPPKXXKXGGXXSPPXXXXKKFFXFXPPXPP 377
           PP      PPPPP+     G   PP    +      PP PP
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRA--VSNPPAPP 392


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -2

Query: 616  PPXPPPPPXXGGVGXKXXPP 557
            PP PPPPP     G K   P
Sbjct: 946  PPPPPPPPLVSAAGGKFVSP 965


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -2

Query: 667 PPPPXGXXXPXXXXXXXPPXPPPPP 593
           PPPP G   P        P PPPPP
Sbjct: 12  PPPPPGFEPPSQ------PPPPPPP 30



 Score = 23.8 bits (49), Expect(2) = 3.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 758 PPPPPPP 738
           PPPPPPP
Sbjct: 24  PPPPPPP 30



 Score = 21.8 bits (44), Expect(2) = 3.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 770 GXXGPPPPPP 741
           G   PPPPPP
Sbjct: 7   GNPPPPPPPP 16


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 15/55 (27%), Positives = 15/55 (27%)
 Frame = -1

Query: 758 PPPPPPPXXXXXXXXXXXXXFARGGGGXXXXPPPXGXXXXXXXFXXXXPPPXPPP 594
           PPPPPPP                   G    P                PPP PPP
Sbjct: 190 PPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPPPP 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,206,681
Number of Sequences: 5004
Number of extensions: 32625
Number of successful extensions: 266
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 601638964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)