Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_F11
         (830 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0715 - 5542648-5543219,5543352-5543544                           31   1.5  
11_02_0065 - 7938007-7938393,7939292-7939435,7940597-7940665,794...    30   2.0  
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677...    30   2.0  
09_02_0603 - 11150739-11150746,11150791-11151340                       30   2.6  
03_02_0045 - 5251234-5251305,5251362-5251419,5252256-5252539,525...    29   6.0  
02_01_0674 + 5020118-5020202,5020301-5020436,5021075-5021140,502...    29   6.0  
09_02_0327 - 7284829-7284889,7284946-7286126                           28   7.9  
05_01_0384 + 2997465-2999777,2999960-3000035,3003027-3003102,300...    28   7.9  

>01_01_0715 - 5542648-5543219,5543352-5543544
          Length = 254

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +2

Query: 254 NPPPPPFXXXPPPRGGGNFIKNPXGGFFF 340
           +PPPPP    PPP GG     +P GG  F
Sbjct: 187 SPPPPP----PPPAGGNFTAPSPAGGMNF 211


>11_02_0065 -
           7938007-7938393,7939292-7939435,7940597-7940665,
           7940762-7940809,7941488-7941584,7941688-7941767,
           7941841-7941912,7942256-7942350,7943903-7943984,
           7945176-7945209,7945255-7945262,7945657-7946058
          Length = 505

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/31 (48%), Positives = 15/31 (48%)
 Frame = +2

Query: 218 PPRKNFF*XXX*NPPPPPFXXXPPPRGGGNF 310
           PP   FF      PPPPPF   P   GGG F
Sbjct: 69  PPPAAFFAAVP-PPPPPPFEYYPAVGGGGGF 98


>01_07_0188 -
           41866689-41866763,41866889-41867155,41867277-41867722,
           41867945-41868033,41868279-41868368,41868661-41868739,
           41868979-41869042,41869597-41869684,41869776-41869836,
           41869906-41869969,41870134-41870188,41870275-41870346,
           41870469-41870551,41870629-41870724,41871279-41871383,
           41872159-41872227,41872470-41872561,41872667-41872886
          Length = 704

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
 Frame = +2

Query: 257 PPPPPFXXXPPPR----GGGNFIKNP 322
           PPPPP    PPP+    GGG F + P
Sbjct: 10  PPPPPPQHPPPPQAGGGGGGEFYRGP 35


>09_02_0603 - 11150739-11150746,11150791-11151340
          Length = 185

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 263 PPPFXXXPPPRGGGNFIKNPXGG 331
           PPPF   PPP  G  F+  P  G
Sbjct: 38  PPPFGFPPPPPPGSTFVPLPQSG 60


>03_02_0045 -
           5251234-5251305,5251362-5251419,5252256-5252539,
           5252836-5253019,5253564-5253814,5253921-5254024,
           5254143-5254281
          Length = 363

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 257 PPPPPFXXXPPPRGGG 304
           PPPPP    PPP G G
Sbjct: 34  PPPPPSAATPPPPGAG 49


>02_01_0674 +
           5020118-5020202,5020301-5020436,5021075-5021140,
           5021219-5021290,5021362-5021433,5024242-5024301,
           5024494-5024565,5024655-5024720,5024798-5024863,
           5024945-5025273,5025713-5025969,5026213-5026484,
           5026580-5026715,5026833-5026972,5027051-5027207,
           5027476-5027634
          Length = 714

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +2

Query: 257 PPPPPFXXXPPPRGGGNFIKNPXG 328
           PPPPPF   PPPR   N   +P G
Sbjct: 244 PPPPPF-MPPPPRRPRNRPSHPRG 266


>09_02_0327 - 7284829-7284889,7284946-7286126
          Length = 413

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +2

Query: 257 PPPPPFXXXPPPRG 298
           PPPPP    PPPRG
Sbjct: 56  PPPPPPPPPPPPRG 69


>05_01_0384 +
           2997465-2999777,2999960-3000035,3003027-3003102,
           3003571-3004442,3004592-3004773,3005206-3005295,
           3005388-3005675,3005776-3005997,3006053-3006133,
           3006634-3006861
          Length = 1475

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +2

Query: 257 PPPPPFXXXPPPRGGGN 307
           PPPPP    PPP  G N
Sbjct: 579 PPPPPPPPPPPPAAGNN 595


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.153    0.524 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,929,511
Number of Sequences: 37544
Number of extensions: 245271
Number of successful extensions: 1871
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1671
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)