Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_F10
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...    75   8e-15
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...    75   8e-15
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    26   5.0  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 75.4 bits (177), Expect = 8e-15
 Identities = 45/102 (44%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
 Frame = +1

Query: 34  MSHRKFSAPRSWVYGILSQKEVRRHRGKVXGVPKDXPSKPVHLTXFIGYKAGMTPWLXNL 213
           MSH KF  PR    G L +K   R RGKV   PKD  SKPVHLT F+GYKAGMT  + +L
Sbjct: 1   MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60

Query: 214 -TVRFKINKKKFWXGXH-LRXPPMVWFGFXGKLK-PXGTXPL 330
                K++K++       +  PPMV  G  G ++ P G   L
Sbjct: 61  DRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSL 102


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 75.4 bits (177), Expect = 8e-15
 Identities = 45/102 (44%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
 Frame = +1

Query: 34  MSHRKFSAPRSWVYGILSQKEVRRHRGKVXGVPKDXPSKPVHLTXFIGYKAGMTPWLXNL 213
           MSH KF  PR    G L +K   R RGKV   PKD  SKPVHLT F+GYKAGMT  + +L
Sbjct: 1   MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60

Query: 214 -TVRFKINKKKFWXGXH-LRXPPMVWFGFXGKLK-PXGTXPL 330
                K++K++       +  PPMV  G  G ++ P G   L
Sbjct: 61  DRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSL 102


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 178 YKAGMTPWLXNLTVRFKINKKKFWXGXH 261
           ++  +TP   NLT R     KK+W   H
Sbjct: 392 WEEDLTPQYGNLTTRLLFASKKYWSRNH 419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,834,694
Number of Sequences: 5004
Number of extensions: 24417
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)