Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_F10
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69337-1|CAA93269.1|  401|Caenorhabditis elegans ribosomal prote...    79   4e-15
Z69336-1|CAA93268.1|  401|Caenorhabditis elegans ribosomal prote...    79   4e-15
Z66495-14|CAH04729.1|  353|Caenorhabditis elegans Hypothetical p...    79   4e-15
Z66495-12|CAA91277.1|  401|Caenorhabditis elegans Hypothetical p...    79   4e-15
Z49936-7|CAH10799.1|  353|Caenorhabditis elegans Hypothetical pr...    79   4e-15
Z49936-6|CAA90183.1|  401|Caenorhabditis elegans Hypothetical pr...    79   4e-15
Z66495-15|CAH04728.1|  303|Caenorhabditis elegans Hypothetical p...    36   0.041
Z49936-8|CAH10798.1|  303|Caenorhabditis elegans Hypothetical pr...    36   0.041
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U39666-1|AAA80412.2|  644|Caenorhabditis elegans Nematode astaci...    28   6.2  
AF098501-3|AAM69106.1|  275|Caenorhabditis elegans Hypothetical ...    28   8.2  
AF098501-2|AAM69105.1|  298|Caenorhabditis elegans Hypothetical ...    28   8.2  
AF098501-1|AAC67404.2|  548|Caenorhabditis elegans Hypothetical ...    28   8.2  

>Z69337-1|CAA93269.1|  401|Caenorhabditis elegans ribosomal protein
           L3 protein.
          Length = 401

 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 42/91 (46%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
 Frame = +1

Query: 34  MSHRKFSAPRSWVYGILSQKEVRRHRGKVXGVPKDXPSKPVHLTXFIGYKAGMTPWLXNL 213
           MSHRKFSAPR    G   +K  R +RG++   PKD  SKP+HLT F+GYKAGMT  + ++
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60

Query: 214 -TVRFKINKKKFWXGXHL-RXPPMVWFGFXG 300
                K+NKK+      +   PPMV  G  G
Sbjct: 61  DKPGSKVNKKEVVEAVTIVETPPMVIAGVTG 91


>Z69336-1|CAA93268.1|  401|Caenorhabditis elegans ribosomal protein
           L3 protein.
          Length = 401

 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 42/91 (46%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
 Frame = +1

Query: 34  MSHRKFSAPRSWVYGILSQKEVRRHRGKVXGVPKDXPSKPVHLTXFIGYKAGMTPWLXNL 213
           MSHRKFSAPR    G   +K  R +RG++   PKD  SKP+HLT F+GYKAGMT  + ++
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60

Query: 214 -TVRFKINKKKFWXGXHL-RXPPMVWFGFXG 300
                K+NKK+      +   PPMV  G  G
Sbjct: 61  DKPGSKVNKKEVVEAVTIVETPPMVIAGVTG 91


>Z66495-14|CAH04729.1|  353|Caenorhabditis elegans Hypothetical
           protein F13B10.2c protein.
          Length = 353

 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 42/91 (46%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
 Frame = +1

Query: 34  MSHRKFSAPRSWVYGILSQKEVRRHRGKVXGVPKDXPSKPVHLTXFIGYKAGMTPWLXNL 213
           MSHRKFSAPR    G   +K  R +RG++   PKD  SKP+HLT F+GYKAGMT  + ++
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60

Query: 214 -TVRFKINKKKFWXGXHL-RXPPMVWFGFXG 300
                K+NKK+      +   PPMV  G  G
Sbjct: 61  DKPGSKVNKKEVVEAVTIVETPPMVIAGVTG 91


>Z66495-12|CAA91277.1|  401|Caenorhabditis elegans Hypothetical
           protein F13B10.2a protein.
          Length = 401

 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 42/91 (46%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
 Frame = +1

Query: 34  MSHRKFSAPRSWVYGILSQKEVRRHRGKVXGVPKDXPSKPVHLTXFIGYKAGMTPWLXNL 213
           MSHRKFSAPR    G   +K  R +RG++   PKD  SKP+HLT F+GYKAGMT  + ++
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60

Query: 214 -TVRFKINKKKFWXGXHL-RXPPMVWFGFXG 300
                K+NKK+      +   PPMV  G  G
Sbjct: 61  DKPGSKVNKKEVVEAVTIVETPPMVIAGVTG 91


>Z49936-7|CAH10799.1|  353|Caenorhabditis elegans Hypothetical
           protein F13B10.2c protein.
          Length = 353

 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 42/91 (46%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
 Frame = +1

Query: 34  MSHRKFSAPRSWVYGILSQKEVRRHRGKVXGVPKDXPSKPVHLTXFIGYKAGMTPWLXNL 213
           MSHRKFSAPR    G   +K  R +RG++   PKD  SKP+HLT F+GYKAGMT  + ++
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60

Query: 214 -TVRFKINKKKFWXGXHL-RXPPMVWFGFXG 300
                K+NKK+      +   PPMV  G  G
Sbjct: 61  DKPGSKVNKKEVVEAVTIVETPPMVIAGVTG 91


>Z49936-6|CAA90183.1|  401|Caenorhabditis elegans Hypothetical
           protein F13B10.2a protein.
          Length = 401

 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 42/91 (46%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
 Frame = +1

Query: 34  MSHRKFSAPRSWVYGILSQKEVRRHRGKVXGVPKDXPSKPVHLTXFIGYKAGMTPWLXNL 213
           MSHRKFSAPR    G   +K  R +RG++   PKD  SKP+HLT F+GYKAGMT  + ++
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60

Query: 214 -TVRFKINKKKFWXGXHL-RXPPMVWFGFXG 300
                K+NKK+      +   PPMV  G  G
Sbjct: 61  DKPGSKVNKKEVVEAVTIVETPPMVIAGVTG 91


>Z66495-15|CAH04728.1|  303|Caenorhabditis elegans Hypothetical
           protein F13B10.2d protein.
          Length = 303

 Score = 35.5 bits (78), Expect = 0.041
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +1

Query: 34  MSHRKFSAPRSWVYGILSQKEVRRHRGKVXGVPK 135
           MSHRKFSAPR    G   +K  R +RG++    K
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34


>Z49936-8|CAH10798.1|  303|Caenorhabditis elegans Hypothetical
           protein F13B10.2d protein.
          Length = 303

 Score = 35.5 bits (78), Expect = 0.041
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +1

Query: 34  MSHRKFSAPRSWVYGILSQKEVRRHRGKVXGVPK 135
           MSHRKFSAPR    G   +K  R +RG++    K
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/38 (31%), Positives = 13/38 (34%)
 Frame = +1

Query: 535 GVXXPPXKXGGGXXXPPXKKXXXXXPPXXXXXKXXPPP 648
           G+  PP    GG   PP        PP        PPP
Sbjct: 82  GIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPP 119


>U39666-1|AAA80412.2|  644|Caenorhabditis elegans Nematode astacin
           protease protein33 protein.
          Length = 644

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -3

Query: 568 PPPXFXGXXXPLFXXXPXXXKPPPXGRKTPF 476
           PPP       P F   P   +PPP  R+ P+
Sbjct: 41  PPPWHRNRGPPPFGPPPPWDRPPPPWRRPPW 71


>AF098501-3|AAM69106.1|  275|Caenorhabditis elegans Hypothetical
           protein H28G03.2c protein.
          Length = 275

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/50 (34%), Positives = 18/50 (36%)
 Frame = -3

Query: 568 PPPXFXGXXXPLFXXXPXXXKPPPXGRKTPFFFLGGGXXWXXXPPKKXXG 419
           PPP   G   P F   P    PPP G   P   LG    +   PP    G
Sbjct: 83  PPP---GMGPPPFMPPPIGMPPPPLGMPPPHIGLGAA-PYAVPPPMSLLG 128


>AF098501-2|AAM69105.1|  298|Caenorhabditis elegans Hypothetical
           protein H28G03.2b protein.
          Length = 298

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/50 (34%), Positives = 18/50 (36%)
 Frame = -3

Query: 568 PPPXFXGXXXPLFXXXPXXXKPPPXGRKTPFFFLGGGXXWXXXPPKKXXG 419
           PPP   G   P F   P    PPP G   P   LG    +   PP    G
Sbjct: 106 PPP---GMGPPPFMPPPIGMPPPPLGMPPPHIGLGAA-PYAVPPPMSLLG 151


>AF098501-1|AAC67404.2|  548|Caenorhabditis elegans Hypothetical
           protein H28G03.2a protein.
          Length = 548

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/50 (34%), Positives = 18/50 (36%)
 Frame = -3

Query: 568 PPPXFXGXXXPLFXXXPXXXKPPPXGRKTPFFFLGGGXXWXXXPPKKXXG 419
           PPP   G   P F   P    PPP G   P   LG    +   PP    G
Sbjct: 356 PPP---GMGPPPFMPPPIGMPPPPLGMPPPHIGLGAA-PYAVPPPMSLLG 401


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,417,496
Number of Sequences: 27780
Number of extensions: 180798
Number of successful extensions: 286
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)