Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_F09
         (849 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    29   0.83 
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    27   2.5  
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      27   2.5  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    27   3.4  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    27   4.4  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    26   7.8  

>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = -3

Query: 757 IPRTAXSSEMSEQSRYASPASRKASTDSPAAP 662
           +PR   S+E+ E+  + +P+S K++T+  + P
Sbjct: 97  LPRNQKSNEIQEKQTFQTPSSEKSTTERESRP 128


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
 Frame = +2

Query: 449 SPATTEAYTREYVRTSLATIPFRTCL----WDP-LEYHTQCSSWTTQNW 580
           S ATT+  T         TIP    +    WDP    H Q   WT QNW
Sbjct: 10  SSATTQPTTEGNASMRKRTIPVVPSVPERKWDPKAPKHIQEQPWTMQNW 58


>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 615 HMHTRTSPDVPTARFXGAAGESV 683
           H H RT+P +P      A+G SV
Sbjct: 142 HTHNRTTPPIPPPHLPNASGSSV 164


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
            Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = -1

Query: 444  SAIDYTLNIFETVSARKGAHAACQRESPSVVESRREPTTRVPDWS 310
            +A+D+ + +   V+  K    + + + PSV+  ++E  + V  WS
Sbjct: 1108 NAVDFNVTLINDVNCAKLFVESLKEKLPSVLSEKKEMPSEVKRWS 1152


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 468 HTHENTSAPRSLPFLFELVCGTLWSIIPS 554
           H +++ S PRSLP  F L    L SII S
Sbjct: 447 HNYKDFSLPRSLPRPFLLALSILLSIISS 475


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 90  ARRIVSRPRDSLGTFRRSLRRS 155
           +R +V+ P D LGT +R LR S
Sbjct: 617 SRHVVATPTDKLGTRKRRLRYS 638


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,277,582
Number of Sequences: 5004
Number of extensions: 67161
Number of successful extensions: 185
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)