Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_F09
         (849 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1105 - 30942735-30942791,30943116-30943466,30943670-309437...    31   1.5  
07_03_0698 - 20765305-20768526                                         30   2.7  
11_04_0154 + 14172294-14172459,14172993-14173054,14174781-141748...    29   4.7  
09_01_0145 + 2175204-2175364,2175510-2175908,2175947-2176117,217...    29   4.7  
12_02_1033 - 25552157-25552732,25553050-25553505,25553608-255536...    29   6.2  
11_01_0690 - 5690427-5690529,5693619-5693792,5694511-5694809           29   6.2  
10_01_0117 + 1447741-1449123                                           29   6.2  
01_05_0357 - 21344146-21344575,21344629-21345455,21345782-21345784     28   8.2  

>04_04_1105 -
           30942735-30942791,30943116-30943466,30943670-30943762,
           30943869-30944072,30944155-30944399,30945019-30945877,
           30946070-30946936,30947113-30947562
          Length = 1041

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 821 ENIEGSHPSHQXAGSPHNSMDNPPD 747
           E++E  H  H  A SPH SM +PPD
Sbjct: 597 ESVESEHHEH-CAFSPHQSMSDPPD 620


>07_03_0698 - 20765305-20768526
          Length = 1073

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +1

Query: 484 RPHLARYHSFSNLFVGPSGVSYPVLQLDNTKLAPQRGKERSARITCTRE 630
           R  LA+  S  N+ +  SG++YPVL     +L    G   SA I CT +
Sbjct: 436 RQRLAKKLSNENVLLVLSGLNYPVLWHQVLELLSSTGCSDSAVILCTND 484


>11_04_0154 +
           14172294-14172459,14172993-14173054,14174781-14174859,
           14174964-14175164,14175420-14175610
          Length = 232

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -1

Query: 753 PGRRXHPRCRSSRDTXRPHPGRHQPTH 673
           PG R  PR R  R T RP P   Q +H
Sbjct: 28  PGPRRKPRARQGRPTPRPDPSGLQFSH 54


>09_01_0145 +
           2175204-2175364,2175510-2175908,2175947-2176117,
           2176323-2176434
          Length = 280

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +1

Query: 505 HSFSNLFVGPSGVSYPVLQLDNTKLAPQRGKERSARITCT 624
           HS  +LFVG      PVL+L N ++  +R    +AR+T T
Sbjct: 152 HSAPSLFVGDLLNDLPVLKLKNPRMIGRRCTLPTARLTIT 191


>12_02_1033 -
           25552157-25552732,25553050-25553505,25553608-25553659,
           25553758-25553831,25553968-25554017,25554106-25554187,
           25554265-25554314,25554405-25554447,25554544-25554624,
           25554723-25554768,25554860-25554906,25554998-25555063,
           25555334-25555400,25555528-25555613
          Length = 591

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
 Frame = -3

Query: 346 APGADNESP*LVAARDQTRLPTRQALQPGHGTFADTNIRAVRTAKRLATKIRA*KCT*QA 167
           AP  D  +   +A+ +   LP    L PGHG+ +        T   +   I   KCT Q 
Sbjct: 447 APRIDRIAEFPLASSEDPLLPIHNKLSPGHGSCS--------TPPFINRSITKDKCTIQV 498

Query: 166 TRT-GDRRSD---RRNVPSESRG 110
            RT GD  SD   R    + SRG
Sbjct: 499 LRTDGDNGSDSSGRNATAASSRG 521


>11_01_0690 - 5690427-5690529,5693619-5693792,5694511-5694809
          Length = 191

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 20/70 (28%), Positives = 32/70 (45%)
 Frame = +3

Query: 627 RTSPDVPTARFXGAAGESVDAFLDAGXAYRDCSDISDXNAVRGIVHAVVRGPRRLVAGV* 806
           R + +   A    AAG++V A  DA   +RD +  S+  A    V A +  P  L+A + 
Sbjct: 25  RAAVEGAVAAAFAAAGDAVAAAADAAAGWRDAAS-SNSTAAVAFVQAAMGRPEALLAKML 83

Query: 807 TLYIFVGXSR 836
            ++  V   R
Sbjct: 84  AIFGLVALLR 93


>10_01_0117 + 1447741-1449123
          Length = 460

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
 Frame = +1

Query: 526 VGPSGVSYPVLQLDNTKLAPQRGKERSARITCTRELRPMYLPRALXGLQVSRLMPSWMRA 705
           VGP+G++Y    ++   LA   GK  +A  TC      +     +    + R++ +W  A
Sbjct: 39  VGPTGITYDRAGIEAWLLAAGAGKTAAASSTCPVTKGDLRADDLVPNHALRRVIQAWCVA 98

Query: 706 XR---IATAPTSRM-XTPS 750
            R   +   PT R+  TP+
Sbjct: 99  NRCRGVERIPTPRVPVTPA 117


>01_05_0357 - 21344146-21344575,21344629-21345455,21345782-21345784
          Length = 419

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 1   YWHLITCTIRRDYRSTPWLAPSL 69
           +WH     +RRDY  +PW A S+
Sbjct: 375 WWHRNRAALRRDYFGSPWSAISV 397


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,942,700
Number of Sequences: 37544
Number of extensions: 546973
Number of successful extensions: 1720
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1720
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)