Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_F09
         (849 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    27   0.22 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   1.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   3.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   3.6  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   8.2  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 27.1 bits (57), Expect = 0.22
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 537 RGSHKQVRKGMVASEVRTYSRVYASVVAGELSAIDYT 427
           + SH + ++  VA+E+    R+ A+VV   L   D+T
Sbjct: 157 QSSHSRSQEKAVAAELEDEQRLLATVVQAHLDTCDFT 193


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 815  IEGSHPSHQXAGSPHNSMDNPPDGVXIRDVGAVAIRXARIQEG 687
            +E + P+     SP NS+      V  RDV A +I   + QEG
Sbjct: 921  LERASPAFSGTSSPTNSLVGKTVAVNFRDVIAKSI-SVKFQEG 962



 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 398  EKGRTRLAKGKALRSLSRAGSRQRES 321
            + G  RL       S+SRAGSR  +S
Sbjct: 1388 DDGSDRLTSPPTPLSISRAGSRDEDS 1413


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -1

Query: 450 ELSAIDYTLNIFETVSARKGAHAACQRESPSVVESRREP 334
           +L +   T+N      A + AHA+   ES   +E R  P
Sbjct: 589 DLGSESKTINAVVNALAEQAAHASASEESVHSMELRTLP 627


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -1

Query: 450 ELSAIDYTLNIFETVSARKGAHAACQRESPSVVESRREP 334
           +L +   T+N      A + AHA+   ES   +E R  P
Sbjct: 557 DLGSESKTINAVVNALAEQAAHASASEESVHSMELRTLP 595


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 367 FPLASRVRPFSGADSLKYIKCIIYG*QFTRNHRSI 471
           F L +   PF+G D +K    I+ G       RSI
Sbjct: 556 FELLTGTPPFTGGDPMKTYNIILKGIDAIEFPRSI 590


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,042
Number of Sequences: 438
Number of extensions: 4357
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)