Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_F08
         (1256 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-11|AAK29900.1|   78|Caenorhabditis elegans Hypothetical...    31   1.3  
Z77662-15|CAI79240.1|  255|Caenorhabditis elegans Hypothetical p...    31   2.3  
U23525-4|AAU05558.1|  455|Caenorhabditis elegans Nematode astaci...    29   9.2  
U23525-3|AAC46566.2|  579|Caenorhabditis elegans Nematode astaci...    29   9.2  
AC024790-13|AAL32247.1|  311|Caenorhabditis elegans Hypothetical...    29   9.2  

>AC025721-11|AAK29900.1|   78|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.12 protein.
          Length = 78

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = -1

Query: 764 FFFXXXGGGGGGXXXXXPPPXXXKXPP 684
           F F   GGGGGG     PPP     PP
Sbjct: 17  FLFPSAGGGGGGCGCGAPPPPPACAPP 43



 Score = 28.7 bits (61), Expect = 9.2
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -3

Query: 765 FFFXXXGGGGGGXXXXXPPP 706
           F F   GGGGGG     PPP
Sbjct: 17  FLFPSAGGGGGGCGCGAPPP 36


>Z77662-15|CAI79240.1|  255|Caenorhabditis elegans Hypothetical
           protein F47B8.14 protein.
          Length = 255

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 684 GGXFXXXXGGGXXXXPPPPPP 746
           GG +    GGG    PPPPPP
Sbjct: 26  GGGYSGGGGGGGDAAPPPPPP 46



 Score = 30.7 bits (66), Expect = 2.3
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 685 GGXFXXXGGGXXXXXPPPPPP 747
           GG +   GGG     PPPPPP
Sbjct: 26  GGGYSGGGGGGGDAAPPPPPP 46


>U23525-4|AAU05558.1|  455|Caenorhabditis elegans Nematode astacin
           protease protein11, isoform b protein.
          Length = 455

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 62  FGFWGPXNLWGKTKKAQXLAXIXXPLPPGGXXFXPPKIGLN 184
           FG WG  N WG  ++ Q    I  P+PP G      + G N
Sbjct: 32  FGNWGGNN-WGTRQRNQEPHDIPPPVPPPGFRGNNDRFGGN 71


>U23525-3|AAC46566.2|  579|Caenorhabditis elegans Nematode astacin
           protease protein11, isoform a protein.
          Length = 579

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 62  FGFWGPXNLWGKTKKAQXLAXIXXPLPPGGXXFXPPKIGLN 184
           FG WG  N WG  ++ Q    I  P+PP G      + G N
Sbjct: 32  FGNWGGNN-WGTRQRNQEPHDIPPPVPPPGFRGNNDRFGGN 71


>AC024790-13|AAL32247.1|  311|Caenorhabditis elegans Hypothetical
           protein Y47D7A.13 protein.
          Length = 311

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -3

Query: 765 FFFXXXGGGGGGXXXXXPPP 706
           F F   GGGGGG     PPP
Sbjct: 16  FLFNLLGGGGGGCCAPPPPP 35



 Score = 28.7 bits (61), Expect = 9.2
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -1

Query: 764 FFFXXXGGGGGGXXXXXPPP 705
           F F   GGGGGG     PPP
Sbjct: 16  FLFNLLGGGGGGCCAPPPPP 35


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,007,970
Number of Sequences: 27780
Number of extensions: 260785
Number of successful extensions: 7825
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3183
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3495543430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)