Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_F01
         (863 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    28   0.097
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    26   0.52 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   2.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   2.1  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    22   8.4  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 28.3 bits (60), Expect = 0.097
 Identities = 41/157 (26%), Positives = 60/157 (38%), Gaps = 28/157 (17%)
 Frame = +3

Query: 390 ERQYKIVFCSE--DIKNAYENLLEN---------RCKICDKIPPFRNFSLLNDHMR-RVH 533
           E+ Y+ + C +  D KN Y++ L +         RC IC K   F   + L  H R    
Sbjct: 59  EKTYQCLLCQKAFDQKNLYQSHLRSHGKEGEDPYRCNICGKT--FAVPARLTRHYRTHTG 116

Query: 534 ER-FFCDLCVN----------HLKIFTNER--RCYTRQELAHHRRKGDLDDTSHRGHP-- 668
           E+ + C+ C            H +I T ER  +C   +    H  K       H G    
Sbjct: 117 EKPYQCEYCSKSFSVKENLSVHRRIHTKERPYKCDVCERAFEHSGKLHRHMRIHTGERPH 176

Query: 669 LCEFCXKRFMDPDELYRHLRKEHW-YCHLCDADGXNF 776
            C  C K F+   +L  H+R       ++C A G  F
Sbjct: 177 KCTVCSKTFIQSGQLVIHMRTHTGEKPYVCKACGKGF 213


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 618 HHRRKGDLDDTSHRGHPLCEFCXKRFMDPDELYRHLRKEH 737
           H + K +  DT +    +CEFC +R+   + L  H   +H
Sbjct: 24  HFQDKHEQSDTLY----VCEFCNRRYRTKNSLTTHKSLQH 59


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 212 VQNVLETNYASILVRLSLRHDCCIVYLGFCKSVS 111
           VQ V++  YA  L   +L+ D C    G C S++
Sbjct: 330 VQFVVDAVYAFALALHNLQKDVCSKLKGLCPSMA 363


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 212 VQNVLETNYASILVRLSLRHDCCIVYLGFCKSVS 111
           VQ V++  YA  L   +L+ D C    G C S++
Sbjct: 420 VQFVVDAVYAFALALHNLQKDVCSKLKGLCPSMA 453


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/16 (43%), Positives = 14/16 (87%)
 Frame = +1

Query: 61  TNSELPRTRNLIKHSV 108
           +N+EL RT+ L+K+++
Sbjct: 86  SNNELVRTKTLVKNAI 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,365
Number of Sequences: 438
Number of extensions: 5018
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)