Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_E14
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    29   1.1  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    29   1.1  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    27   2.6  
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc...    27   3.5  
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy...    27   3.5  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    26   8.0  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   8.0  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   8.0  

>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 263 NLHPPAEPEHRRIARHERTGRL 328
           NL  PAE +HRR+ R +R G L
Sbjct: 235 NLDSPAELKHRRLVRSQRNGPL 256


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
 Frame = +3

Query: 81   TSLINIVAFIPAYRSKRTKIKATTQTTILRVPPLLHDVTLTLRKPTANTCQARTSTHFTG 260
            +S++N    I +     +    T+ T +   PP+     +    P  ++    TST  T 
Sbjct: 1623 SSVLNSSTPITSSTVLNSSTPITSSTALNTSPPITSSTVVNSSTPITSSTVVNTSTPITS 1682

Query: 261  KTCIRQRNPNTAASP-DTNAP 320
             T +    P T+++  +T+ P
Sbjct: 1683 STVVNSSTPITSSTALNTSTP 1703


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +3

Query: 81  TSLINIVAFIPAYRSKRTKIKATTQTTILRVPPLLHDVTLTLRKPT-ANTCQARTSTHFT 257
           T L   +A IP      T+ +  T +T+L +  L H V + L +P+  N  +   +  +T
Sbjct: 428 TELQKWIADIPMELQWNTRSQKETSSTVLLLHMLYHSVIIILNRPSDDNYLKLDNTERYT 487

Query: 258 GKTC 269
            + C
Sbjct: 488 FEIC 491


>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 18/69 (26%), Positives = 28/69 (40%)
 Frame = +3

Query: 540 STSPKTRHLGSS*STNGAFRYFKHRSPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLSGS 719
           +T+P  R +  + STN      K  S      SL   G+   +    + L  + D L   
Sbjct: 235 TTNPLIRKVSFTGSTNVGKILAKQSSSTLKKLSLELGGNAPFIVFEDADLEKAADALMAC 294

Query: 720 RFRSGGRFC 746
           +FR  G+ C
Sbjct: 295 KFRGSGQTC 303


>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 215

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 624 SSNPSLATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRFCEARLLL 764
           SS+ +L T+ +TS+    H   +     L+G+     GRFC A  L+
Sbjct: 134 SSDKALLTRPATSRRRCCHPTCTRITLRLAGNCLHCNGRFCAAHRLM 180


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = +2

Query: 173 STSLTRCYSHTEEANR---EHLSSTHKHALHRKNLHPPAEPEHRRIARHER 316
           STS +R  S      R   E   S H+H  HR++     EP    ++RH R
Sbjct: 122 STSRSRSTSPANRHRRKEKERTRSNHRHGSHRRH-----EPYRTHLSRHHR 167


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 553 KHVISDPPDPLTVLLGTSSTGH 618
           +H++ +PP PLTVL      GH
Sbjct: 499 RHILDNPPKPLTVLDIYFQIGH 520


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +2

Query: 209 EANREHLSSTHKHALHRKNLHPPAEPEHRRIARHERTGRLILQVTTTSD 355
           E N ++L +  K      +L PP +    R    E+TG L  Q T+TS+
Sbjct: 60  EINDKNLEA-EKDIESNLSLRPPEDDLDSRSIESEQTGTLSKQTTSTSE 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,347,184
Number of Sequences: 5004
Number of extensions: 67947
Number of successful extensions: 220
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)