Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_E13
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    31   0.28 
SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       29   0.66 
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa...    29   0.66 
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    28   1.5  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    28   1.5  
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    27   3.5  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    26   6.1  
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    26   8.1  

>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +3

Query: 303 SAYTSRANRRTKPRVTAPSVSS 368
           S  T R NR T+PRV+APS SS
Sbjct: 45  SGRTRRRNRNTRPRVSAPSSSS 66


>SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 104

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 665 VSYDEHESVWHSXCYTVCISNRCARLCRTPSLYRRRGL 552
           V +DE +  W S  + VC+  RC   C+  S  ++  L
Sbjct: 37  VHHDERKESWRSHGFIVCLHIRCCICCKYNSKIKKPSL 74


>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +2

Query: 5   GEQCTTSTQHADPEHTEFVDR--EVERRASLPPSDALPSITTSEVKEAI 145
           G++ T+S +   PE   F DR   +++RA +PPS  LP +  S+ +  I
Sbjct: 357 GDELTSSLRELKPEGNLFADRYLSLQQRAMVPPS--LPVLKKSKYRAKI 403


>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 25/107 (23%), Positives = 45/107 (42%)
 Frame = +2

Query: 38  DPEHTEFVDREVERRASLPPSDALPSITTSEVKEAIDSLQPRKAPGSDGIRNRALKLLPA 217
           D    E + +  ER+ +L  S    S   S  K  ++   P    G+DG RN   K   +
Sbjct: 379 DHLRNELISKSAERKENLMQSVFNSSKQISLRKYELEPYDPIYGLGTDGWRNVLTKFGSS 438

Query: 218 QLITMLATILNAAMTNCIFPAAWKEADVIGIHKPGKPKNETASYRPI 358
           ++I   A ++  A+ +     A KE + +    P +     A+ +P+
Sbjct: 439 KIIGREALMIYRALHDWRDSVARKEDESVRYVLPNRLLIAIAASKPV 485


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
 Frame = +1

Query: 544  SDRSPLLRYSEGVRQSLAQRFDIQTV*HXECQTDSCSSYETTCRTVR-----SDIESRER 708
            S   P + Y+ G     A+ +D Q        T+  S++ +T  T R     SD+ESR +
Sbjct: 1060 SPPDPHIGYTPGSDMPSAKLYDQQLTLSPSLMTNQGSNFSSTDSTPRKSINSSDVESRSK 1119

Query: 709  VPGP 720
              GP
Sbjct: 1120 TDGP 1123


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 56  FVDREVERRASLPPSDALPSITTSEVKEAIDSLQPRKAPG 175
           FVDR++   A  PP + LPS++   +K AI     R   G
Sbjct: 356 FVDRQLHNNAIYPPINVLPSLSRL-MKSAIGEGMTRNDHG 394


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 41  PEHTEFVDREVERRASLPPSDALPSITTS 127
           P+H   +D  + R  S+  S+ALP +  S
Sbjct: 632 PKHLPSLDETISREMSIASSEALPQVEKS 660


>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +2

Query: 251 AAMTNCIFPAAWKEADVIGIHKPGKPKNETASYRPISLLPAIGKLY 388
           +++ +C+   +W E  VI   +  K   E   Y P S+L   GK Y
Sbjct: 164 SSLPDCLDVTSWTENGVIMGARHKKYAIEGVQYHPESILSEYGKEY 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,583,587
Number of Sequences: 5004
Number of extensions: 76719
Number of successful extensions: 243
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)