Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_E10
(854 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 31 0.28
SPBC887.06c |snx3|grd19|sorting nexin Snx3|Schizosaccharomyces p... 27 3.4
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.4
SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc... 27 4.5
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi... 27 4.5
SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces pomb... 27 4.5
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch... 27 4.5
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 26 5.9
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 26 5.9
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 26 7.8
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 26 7.8
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 26 7.8
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 30.7 bits (66), Expect = 0.28
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +2
Query: 116 EYSGRIPGSLRRARSRPRPETEGSYYGGALRHHAR--PGLHYA*GYMSDSLRFSEDIREH 289
E+ GR+ + RSRP T G Y G R ++R P + GY ++ R D +
Sbjct: 166 EFYGRVLNVQKAKRSRPHSPTPGKYMGYDRRRNSRDFPSNNKDGGYRRNNYR-DRDSNRY 224
Query: 290 RN 295
RN
Sbjct: 225 RN 226
>SPBC887.06c |snx3|grd19|sorting nexin Snx3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +3
Query: 228 YTTLEAICQTAFGFPKISESIVTKEY--YDAFHRCLE 332
+TT E +C+T + ++ S V + Y ++ FH LE
Sbjct: 42 FTTYEIVCRTNMPYFRLHNSSVRRRYSEFEKFHDMLE 78
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 3.4
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -3
Query: 642 PPSRVPQTEPCPPPSGFVPRTAPVY*PAFPASSP 541
PPS P P PPS +P AP P P S+P
Sbjct: 424 PPSAPPSLPPSAPPS--LPMGAPAA-PPLPPSAP 454
>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 329
Score = 26.6 bits (56), Expect = 4.5
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +3
Query: 474 RECAKQDNRNEIVPNRRRFKSFLDLMLEMQVSTPELSVEQIRSEVDTVLFGGHETVATTL 653
REC++ + NE++ N R F +F L +Q S+ +++ + S ++L VA +
Sbjct: 144 RECSRHEALNEVLLNSRDFWTFFSL---IQASSFDMASDAF-STFKSILLNHKSQVAEFI 199
Query: 654 FY 659
Y
Sbjct: 200 SY 201
>SPAC1002.16c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 26.6 bits (56), Expect = 4.5
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -1
Query: 254 LTYSLKRSVGQVVHDVEGLLRSTSLQSLDEVGCAPCEDFLVSFHYTRRECARQL 93
++YSL H+ GLL + + E G PC ++ Y+R E A ++
Sbjct: 132 ISYSLTTIFTGFCHNFGGLLAARLVLGFCEAGLFPCLALYLTMIYSRVELAPRI 185
>SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 245
Score = 26.6 bits (56), Expect = 4.5
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Frame = +3
Query: 468 QERECAKQDNRNE---IVPNRRRFKSFLDLMLEMQVSTPELSVEQI----RSEVDTVLFG 626
QE+E + +NR + IV + R+ SF +L + S L+ + R V V+F
Sbjct: 69 QEKEVLEVENRLQNLKIVKDLRQNPSFRELRMPFNRSNHSLTNNLLSGPGRITVPPVIFY 128
Query: 627 GHETVATTLFYALLMIGRDKNLQDNSI 707
+T YA+ +G+D L D++I
Sbjct: 129 DK---STRQVYAIAHVGKDVGLDDDTI 152
>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 26.6 bits (56), Expect = 4.5
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +3
Query: 501 NEIVPNRRRFKSFLD-LMLEMQVSTPELSVEQIRSEVDT 614
NEIV N+ ++ + LML++ VS+ E +VE IR+ T
Sbjct: 352 NEIV-NKENIRTIVKTLMLQLIVSSDESAVEDIRNSTAT 389
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 26.2 bits (55), Expect = 5.9
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Frame = +3
Query: 471 ERECAKQDNRNEIVPNRRRFKSFLDLMLEMQVSTPELSVEQIRSEVDTVLFGGHETVATT 650
ER ++ R ++ + + K + +MQ ++ + SV++ +EVD + G +A T
Sbjct: 932 ERMALREAERRKLRHGKLQ-KHLDETKADMQFTSEKPSVDESITEVDDAIKDGPPVLAET 990
Query: 651 LFYALLM-IGR---DKNLQDNSI 707
L +L+ +G D +++DN I
Sbjct: 991 LTNSLMEDVGPENVDMDIEDNEI 1013
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +2
Query: 101 GHIHAEYSGRIPGSLRRARSRPRPETEGSYYGGALRHH 214
G Y GR PG R R R R + G GG H
Sbjct: 433 GSSRGGYHGRNPGGPNRQRYRGRRDGRGGNTGGGHSFH 470
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.8 bits (54), Expect = 7.8
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Frame = +3
Query: 213 MHDLAYTTLEAIC---QT-AFGFPKISESIVTKEYYDAFHRCLELLIRRGLNPLLHL-DF 377
+ ++ Y LEA QT A +P + + + +Y A+++C+ +IRR + H+ D+
Sbjct: 1217 LRNITYILLEAPVFRKQTSAEPYPARMDDLSSAIFYSAWNQCIAGIIRRYPIDVYHINDY 1276
Query: 378 MYRLTPA--SKELQKCVGILHN 437
L P + CV LHN
Sbjct: 1277 HGALAPCYLLPNVIPCVLSLHN 1298
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 25.8 bits (54), Expect = 7.8
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +3
Query: 267 FPKISESIVTKEYYDAFHRCLELLIRRGLNPLLHL-DFMYRLTPA--SKELQKCVGILHN 437
+P + + + +Y A+++C+ +IRR + H+ D+ L P ++ C LHN
Sbjct: 1244 YPARMDDLGSAIFYSAWNQCIAEVIRRNPIDIYHINDYHGALAPCYLLPDIIPCALSLHN 1303
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 341 PTWPQPSAASRFHVPSNSSIQRTAEVRRH 427
P P P +ASR H P +S ++ E H
Sbjct: 103 PATPIPVSASRHHKPHHSGLKNLLEKAMH 131
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,403,650
Number of Sequences: 5004
Number of extensions: 70455
Number of successful extensions: 267
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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