Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_E10
         (854 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    67   2e-13
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    24   2.1  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   4.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.3  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 67.3 bits (157), Expect = 2e-13
 Identities = 65/288 (22%), Positives = 134/288 (46%), Gaps = 34/288 (11%)
 Frame = +3

Query: 75  WKNSIKKLSGTFTPSIVEGYQEVFAGRAADLVQRLKARTTEEPFDIMHDLAYTTLEAICQ 254
           W+N  K ++ TF  ++++ + ++F   A  +V++++    +E FD  + ++  T++ + +
Sbjct: 134 WRNHRKLIAPTFHLNVLKSFIDLFNANARSVVEKMRKENGKE-FDCHNYMSELTVDILLE 192

Query: 255 TAFGFPKISESIVTKEYYDAFHRCLEL-----------------LIRRGLNPLLHLDFMY 383
           TA G  K +      EY  A  +  ++                 L + G N +  L+ ++
Sbjct: 193 TAMGVSKPTRDHNAFEYAMAVMKMCDILHLRHTKIWLRPDWLFNLTKYGKNQIKLLEIIH 252

Query: 384 RLTPASKELQKCV------GILHN--------VSNTVITKLIQERECAKQDNRN--EIVP 515
            LT    +L+K         I+ N         +N V+  +   +    +D+ +  + V 
Sbjct: 253 GLTKKVIQLKKEEYKSGKRNIIDNSAQKTESKTNNIVVEGVSFGQSVGLKDDLDIDDDVG 312

Query: 516 NRRRFKSFLDLMLEMQVSTPELSVEQIRSEVDTVLFGGHETVATTLFYALLMIGRDKNLQ 695
            ++R ++FLDL++E   +   L+ ++++ +VDT++F GH+T A+   + L ++G   ++Q
Sbjct: 313 EKKR-QAFLDLLIEAGQNGVLLTDKEVKEQVDTIMFEGHDTTASGSSFFLAVMGCHPDIQ 371

Query: 696 DNSITXFATWSGDGGRPVTGADLXHLRYXE-ARGWRLAXVPPFPXVLR 836
           +  I       GD  RP T  D   ++Y E      L   PP P + R
Sbjct: 372 EKVIQELDEIFGDSDRPATFQDTLEMKYLERCLLETLRMYPPVPLIAR 419


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 674 DHEEGVEQGGGHRLVSPKQNRVHL 603
           DH  G++  GG+R  SP     H+
Sbjct: 99  DHGSGMDGMGGYRSASPSPGMGHM 122


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 453 ITKLIQERECAKQDNRNEIVPNRRRFKS 536
           +  LI+   CAK +N+N    N+ ++K+
Sbjct: 408 VNNLIKNTRCAKSNNQNN---NQNKYKN 432


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 580 SSGVLTCISSIKSRNDLNLR 521
           S+ VL  ISS+KS  +L+LR
Sbjct: 824 STKVLAMISSVKSFMELSLR 843


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,292
Number of Sequences: 438
Number of extensions: 5504
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)