Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_E08
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0665 - 18506221-18506271,18506331-18506401,18507097-185071... 31 0.81
11_04_0460 - 17955102-17955146,17955253-17955310,17955442-179555... 29 3.3
03_06_0034 + 31197846-31198417,31198562-31198987,31199074-311993... 29 4.3
06_03_1310 + 29238644-29240260 29 5.7
02_01_0129 - 934865-935152,935241-935490,935965-936105,937175-93... 29 5.7
12_02_1275 - 27482784-27483272 28 7.5
09_04_0361 - 16948740-16948860,16948951-16949018,16949424-169495... 28 7.5
06_03_0685 - 23499779-23500204 28 7.5
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 28 7.5
04_04_0407 - 24983491-24983575,24983655-24984015,24984367-249844... 28 7.5
04_03_0489 + 16503325-16503747,16503916-16503978 28 9.9
>04_03_0665 -
18506221-18506271,18506331-18506401,18507097-18507169,
18507476-18507805
Length = 174
Score = 31.5 bits (68), Expect = 0.81
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 169 WKWCGLRRDQTGREG 213
W WCGLRR + GR G
Sbjct: 65 WMWCGLRRSKAGRRG 79
>11_04_0460 -
17955102-17955146,17955253-17955310,17955442-17955593,
17955888-17955993,17956101-17956222,17956766-17956834,
17956969-17957214,17957331-17957373,17957449-17957520,
17957954-17958066,17958158-17958238,17958343-17958415,
17959413-17959519,17960410-17960514,17960684-17960974,
17961621-17961707,17961774-17961842,17961917-17961973,
17962057-17962155,17962223-17962312,17962395-17962511,
17964164-17964244,17964353-17964502,17964812-17964956,
17967359-17967510,17967647-17967784,17967838-17967914,
17968032-17968134
Length = 1015
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +2
Query: 143 SSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPGSKRSALSASDAECFSLCLG 307
SSS S+Y N +G +T +++ SG +S S +S+ D E L LG
Sbjct: 781 SSSSSRYSNSSGTIFQKTSVQKRLSSGSSSSSKNKRSTAVVMSSPDCELDLLLLG 835
>03_06_0034 +
31197846-31198417,31198562-31198987,31199074-31199386,
31199510-31199560
Length = 453
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 264 AERLLPGALRDAPSPE*TFSTCLVSTESTPF 172
++RL+ ALR PSP F++ L +TPF
Sbjct: 39 SQRLVYAALRSLPSPRALFASLLSQLSATPF 69
>06_03_1310 + 29238644-29240260
Length = 538
Score = 28.7 bits (61), Expect = 5.7
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Frame = -1
Query: 380 APARYPSGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSVCCRERSETPRH----RNK 213
APA+ P +C A + ++A+ T TRRP + RS P H R
Sbjct: 338 APAQRPPAQCAAAAAHPFDCSKAQCQATPPTTRRPGGR--TPLAPHRSPLPHHMPPRRTP 395
Query: 212 PSRPVWSRRSPHH 174
P+ P S +P H
Sbjct: 396 PTPPPPSSPTPSH 408
>02_01_0129 -
934865-935152,935241-935490,935965-936105,937175-937707
Length = 403
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +3
Query: 255 NAQLC-RLRTPSVSRCAWAPGLCGGPDVP 338
NA C R P V+ +WAP CGG VP
Sbjct: 75 NAWNCPRNSRPPVAALSWAPARCGGGAVP 103
>12_02_1275 - 27482784-27483272
Length = 162
Score = 28.3 bits (60), Expect = 7.5
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 166 QWKWCGLRRDQTGREG 213
+W W GLRR +TGR G
Sbjct: 144 RWVWRGLRRTKTGRRG 159
>09_04_0361 -
16948740-16948860,16948951-16949018,16949424-16949510,
16949626-16949694,16949786-16949854,16949944-16950765
Length = 411
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -3
Query: 366 PLRAVQSREQGHQDHHRGPAPRHSEKHSASEADRAERL 253
P + S +GH +HHR + A E DR + L
Sbjct: 44 PFCMLTSSSRGHAEHHRNGGGGGEHRREAGEGDRPKAL 81
>06_03_0685 - 23499779-23500204
Length = 141
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +3
Query: 186 PSRPNRSRRFIPVTGRL*ALPAANAQLCRLRTPSVSRCAWAP 311
P R R RR+ P GR+ LP ++CR R P R P
Sbjct: 42 PPRGGRIRRWPPRRGRIRGLPPLGGRICR-RPPRGGRIHGLP 82
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 28.3 bits (60), Expect = 7.5
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = -1
Query: 380 APARYPSGRCRAVSRDIRTTTEARRPGTARNTRRPKPT-ELSVCCRERSETPRHRNKPSR 204
+P R+ R IR + + P R+ R P + R RS PR R P R
Sbjct: 296 SPIRHGGTPSRRPGSPIRRRSPSPPPRRLRSPRHLSPRRDRGSPIRRRSPLPRRRLTPPR 355
Query: 203 PVWS 192
+WS
Sbjct: 356 RMWS 359
>04_04_0407 -
24983491-24983575,24983655-24984015,24984367-24984406,
24984466-24984468
Length = 162
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -1
Query: 386 LXAPARYPSGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSVCCRER 240
L A SG + ++ IRT+ RP T + +R PK +S R +
Sbjct: 28 LKAAKAVKSGTAKKTTKKIRTSVTFHRPKTLKKSRDPKYPRVSTPGRNK 76
>04_03_0489 + 16503325-16503747,16503916-16503978
Length = 161
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = +3
Query: 246 PAANAQLCRLRTPSVSRCAWAPGLCGGPDVPAHGSA 353
PAA A L RLRTP+ + C G P V H A
Sbjct: 49 PAAAACLRRLRTPATAACLRRAGNPRPPPVSPHKGA 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,202,055
Number of Sequences: 37544
Number of extensions: 236011
Number of successful extensions: 926
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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