Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_E06
         (836 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890...    31   1.1  
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309...    31   1.1  
03_04_0006 + 16257288-16259522                                         30   2.0  
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166...    30   2.0  
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729...    29   3.5  
06_03_0854 + 25400855-25403741,25406174-25407708                       29   3.5  
05_06_0098 + 25560158-25560925                                         29   6.1  
04_03_0732 + 19095320-19095827,19095848-19096621,19096863-190969...    29   6.1  

>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
            8905437-8905690,8905785-8908799,8908889-8909001,
            8909975-8910164,8910399-8910512,8910591-8910698,
            8910941-8911073,8911206-8911408,8911626-8911826
          Length = 1889

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 530  GSQMPRHLISDSHEWINEIPTVPIYYLAKPQPRERAWENQRGKKXLLSL 676
            G+  PR +  D  EW N  PT+   ++ + +PRE     Q+ K  +  L
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLKPAIFIL 1441


>03_04_0090 +
           17228253-17228403,17229062-17229129,17229238-17230902,
           17231002-17231143,17231648-17232399
          Length = 925

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
 Frame = -1

Query: 143 TNIDQTRH------RPHPLPVQTRHAPVLRANP 63
           T IDQ  H      + H +PVQ  H+PVL+ NP
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356


>03_04_0006 + 16257288-16259522
          Length = 744

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = -1

Query: 737 AKRSP---TYATXLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWE 585
           A+RSP    Y T L +   ARL    T    PA SP    +AV S   + G W+
Sbjct: 162 ARRSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSGKRVAVASWQGKPGLWD 215


>02_05_0110 +
           25914110-25915006,25915726-25915797,25916411-25916699,
           25916864-25916949,25917267-25917490,25917674-25917740,
           25917830-25917889,25917995-25918078,25918475-25918555
          Length = 619

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 554 LDDEAFGYL-KRVIVTPAVHPRLLEFLHVDIQSTG 453
           LDDE   YL  R  V   +  RLL+F++VD  STG
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313


>12_01_0796 +
           7292523-7292783,7292963-7293018,7295274-7295331,
           7295777-7295843,7296461-7296516,7296638-7296691,
           7296836-7296961
          Length = 225

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 113 HPLPVQTRHAPVLRANPYSEVTDPICRLPL 24
           H L +  RH P L+A P S +    C+LPL
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPL 136


>06_03_0854 + 25400855-25403741,25406174-25407708
          Length = 1473

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 737 AKRSPTYATXLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 612
           AKR+PT  T    P  AR  +++   +F   +P P P +V+S
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVIS 515


>05_06_0098 + 25560158-25560925
          Length = 255

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -1

Query: 122 HRPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLF 12
           HRP P P  +   P L  +P + V   I   P PT F
Sbjct: 31  HRPPPPPPSSSSQPALPPSPRTVVPRTIDTTPFPTTF 67


>04_03_0732 +
           19095320-19095827,19095848-19096621,19096863-19096906,
           19097191-19097250
          Length = 461

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 119 RPHPLPVQTRHAPVLRANPYSEVTDP 42
           RP+PL V +RHA VL    +  V DP
Sbjct: 133 RPNPLDVVSRHAGVLSRGDHCLVVDP 158


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,152,251
Number of Sequences: 37544
Number of extensions: 481982
Number of successful extensions: 1492
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1492
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)