Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_E05
         (913 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   3.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   6.7  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   6.7  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   6.7  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
 Frame = +3

Query: 717 GLDXLXGXRDX----GXGXPGHXPKPEGVXXXP 803
           G+D + G R      G G  GH P P G    P
Sbjct: 103 GMDGMGGYRSASPSPGMGHMGHTPTPNGHPSTP 135


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 88  IFLFDLSFDKLTRK 47
           IF+FDL+ D L RK
Sbjct: 281 IFIFDLTTDTLIRK 294


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +1

Query: 73  DQIEISADDVFVDLGSGVGQVVLQMAAATPCRICL 177
           D+++I  + V + +G   G+VV  +      R CL
Sbjct: 499 DEVQIDGEPVKITIGIHSGEVVTGVIGHRMPRYCL 533


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +1

Query: 73  DQIEISADDVFVDLGSGVGQVVLQMAAATPCRICL 177
           D+++I  + V + +G   G+VV  +      R CL
Sbjct: 499 DEVQIDGEPVKITIGIHSGEVVTGVIGHRMPRYCL 533


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,770
Number of Sequences: 438
Number of extensions: 4232
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)