Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_D24
(917 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 33 0.32
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 33 0.42
02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550 32 0.73
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 31 0.97
09_01_0061 + 948663-948708,949638-949993 31 1.3
11_06_0610 - 25449085-25453284 30 3.0
02_04_0452 + 23044190-23045227 29 3.9
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 29 3.9
04_01_0041 - 464695-464850,467485-469029 29 6.8
01_05_0227 - 19512866-19514983 29 6.8
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595... 28 9.0
02_01_0302 - 2021221-2023305 28 9.0
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 28 9.0
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 33.1 bits (72), Expect = 0.32
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +3
Query: 534 PPSPAISATS-TRSSNPRFHTPTTPDL--TSISINPLTPY*KEFAPGLKPPLSSXAPSAY 704
P SP+ S TS + S ++PT+P TS S +P +P +P P + +PS
Sbjct: 1699 PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPNYSPTSPSYNPSSAKYSPSHA 1758
Query: 705 LTPSS 719
+PSS
Sbjct: 1759 YSPSS 1763
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 32.7 bits (71), Expect = 0.42
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Frame = +3
Query: 534 PPSPAISATS-TRSSNPRFHTPTTPDL--TSISINPLTPY*KEFAPGLKPPLSSXAPSA- 701
P SP+ S TS + S ++PT+P TS + +P +P +PG P S +PS+
Sbjct: 1747 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSSAYSPTSPAYSPTSPGYSPTSPSYSPSSP 1806
Query: 702 YLTPSSL 722
PSS+
Sbjct: 1807 SYNPSSV 1813
>02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550
Length = 204
Score = 31.9 bits (69), Expect = 0.73
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = +3
Query: 528 IKPPSPAISATSTR-SSNPR--FHTPTTPDLTSISINPLTP 641
I PPSPA + S+R S +PR F TP T T+ S +P +P
Sbjct: 25 ITPPSPASTPRSSRPSESPRSGFSTPATAPRTAASPSPPSP 65
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 31.5 bits (68), Expect = 0.97
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 546 AISATSTRSSNPRFHTPTTP 605
A S+T+TR S PR H PTTP
Sbjct: 2 AASSTATRLSPPRLHAPTTP 21
>09_01_0061 + 948663-948708,949638-949993
Length = 133
Score = 31.1 bits (67), Expect = 1.3
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 29 LCL*XVSAASAIPSLVNAFSSSKPPQTDNPSAR 127
LC+ VS+ PS N +SS KPP T P+ R
Sbjct: 91 LCVIHVSSKDHRPSQDNPYSSDKPPPTSPPAQR 123
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.9 bits (64), Expect = 3.0
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 534 PPSPAISATSTRSSNPRFHTPTTPDLTSIS-INPLTPY*KEFAP 662
PP+P A+S P HTP+ P+ T S +P TP K +P
Sbjct: 618 PPTPESKASSPPPPAPEGHTPSPPESTPPSEKSPPTPESKASSP 661
>02_04_0452 + 23044190-23045227
Length = 345
Score = 29.5 bits (63), Expect = 3.9
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +1
Query: 481 HPFILSHYYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPP 603
H +L H+ +A SH SR H P + P S PP
Sbjct: 166 HGCLLLHHAGHGHGHAHSHSHSHSRAHNPSTRPPTSAPPPP 206
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 29.5 bits (63), Expect = 3.9
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +2
Query: 284 TETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSL--KIPVTVDLCWTTADVT 457
TE +N V V L SS GY D + ++ V + K+ V +D TAD++
Sbjct: 167 TEAGANRVLVCDLH--SSQAMGYFDIPVDHVYGQVMNLIGDVRGKVAVMMDDMIDTADIS 224
Query: 458 VEGVNVLATPSSSRITIGGLALMHQ 532
+ +N+L P G L+HQ
Sbjct: 225 LPNINILMKPIKLGTIAKGAELLHQ 249
>04_01_0041 - 464695-464850,467485-469029
Length = 566
Score = 28.7 bits (61), Expect = 6.8
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 245 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 421
+I R + D++ T +SN + V +LP VSS + Y D ++ + P P ++ V
Sbjct: 40 LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99
Query: 422 TVD 430
+D
Sbjct: 100 PLD 102
>01_05_0227 - 19512866-19514983
Length = 705
Score = 28.7 bits (61), Expect = 6.8
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 462 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 370
S +T + +QQ + ++ LG GKTT ++L
Sbjct: 18 SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48
>02_05_0788 +
31758119-31758384,31758482-31758634,31759385-31759509,
31759650-31759678,31760943-31761008,31761059-31761125,
31761226-31761370,31761404-31761451,31762014-31762182,
31762645-31762779,31762858-31763064,31763608-31763735,
31763815-31763866,31764046-31764060,31764502-31764609
Length = 570
Score = 28.3 bits (60), Expect = 9.0
Identities = 21/86 (24%), Positives = 36/86 (41%)
Frame = +2
Query: 236 QRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 415
Q I + ++ L N TV + N + GY+ +N+ + PSLK
Sbjct: 198 QVFCIVLEMFFYQLLQLLKVPNEKTVNVIENAIQTLPGYQPPKHINIGEYISSHVPSLK- 256
Query: 416 PVTVDLCWTTADVTVEGVNVLATPSS 493
D C T ++ +EG++ L S+
Sbjct: 257 ----DFCEPTVEM-LEGMSALKALST 277
>02_01_0302 - 2021221-2023305
Length = 694
Score = 28.3 bits (60), Expect = 9.0
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = +3
Query: 537 PSPAISATSTRSSNPRFHTPTTPDLTS--ISINPLTPY*KEFAPGLK--PPLSSXAPSAY 704
PSP S+T+ S +P TPT P S ++ P P + P ++ PP S P
Sbjct: 519 PSPPSSSTAPPSHSPPQSTPTHPSYPSPPVTYTPPPPTSAD-RPDVRFAPPPGSYGPIPS 577
Query: 705 LTPSS 719
PSS
Sbjct: 578 TPPSS 582
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 28.3 bits (60), Expect = 9.0
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Frame = +3
Query: 534 PPSPAISATSTRSSNPRFHTPT---TPDLTSISINPLTPY*KEFAPGLKPPLSSXAPSAY 704
PPSP+I + T +TPT TP S +P TP + P + +PS+
Sbjct: 105 PPSPSIGTSPTTPGGGGGYTPTPSDTPPSPSSDTSPSTPG-GGCSSSPTPCDAPPSPSSD 163
Query: 705 LTPSSLGMAKGVRP 746
+P++ G G P
Sbjct: 164 TSPTTPGGGGGYSP 177
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,085,105
Number of Sequences: 37544
Number of extensions: 499416
Number of successful extensions: 1497
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1495
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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