Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_D23
(849 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 52 7e-09
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 45 8e-07
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 44 1e-06
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 44 2e-06
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 43 3e-06
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 43 3e-06
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 41 1e-05
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 41 1e-05
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 40 2e-05
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 40 2e-05
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 40 3e-05
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 40 3e-05
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 40 3e-05
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 40 3e-05
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 40 3e-05
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 40 3e-05
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 38 9e-05
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 38 1e-04
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 38 2e-04
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 32 0.006
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 31 0.013
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 30 0.031
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 8.2
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 52.0 bits (119), Expect = 7e-09
Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Frame = +3
Query: 321 QFVLAIASAAECENATSLSLMIDSLLATYDRESPPDSK----IVVNLTLHLRHA---NIR 479
Q ++ I SA C + D LL+ Y+R P S +VV L L L N++
Sbjct: 4 QTIILILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLK 63
Query: 480 ESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 626
+ T + L+ W D + W+ E+G T L V SE +W PD+VL N
Sbjct: 64 DQILTTNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYN 111
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 45.2 bits (102), Expect = 8e-07
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Frame = +3
Query: 354 CENATSLSLMIDS---LLATYDRESPPDSKIV--VNLTLHLRHANIRESESTVRILADLQ 518
C++ TS S + L YDR+ P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 519 MNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVL 620
+ W L+W + E+ ++ V S +W PD+V+
Sbjct: 88 LMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIVM 122
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 44.4 bits (100), Expect = 1e-06
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Frame = +3
Query: 360 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRHAN-IRESESTVRILADLQMNW 527
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 528 IDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLNXXXXXXXXLRSP 662
+D+RL++ G+ + + R+W+PD N + SP
Sbjct: 62 VDRRLAFQGGKETLALSISMLARIWKPDTYFYNGKHSYLHTITSP 106
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 43.6 bits (98), Expect = 2e-06
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 6/117 (5%)
Frame = +3
Query: 294 TLHKIVLSAQFVLAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLT--LHLRH 467
TL + + + ++A E + D LL+ Y+R P LT L L+
Sbjct: 8 TLGVLFNTLHIIYSVAGLKIFEANPDTKRLYDDLLSNYNRLIRPVMNNTETLTVQLGLKL 67
Query: 468 ANIRESESTVRILAD---LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 626
+ + E +++ ++ W D +L WN E+G L V SE +W PD+VL N
Sbjct: 68 SQLIEMNLKNQVMTTNVWVEQRWNDYKLKWNPEEYGGVEMLYVPSENIWLPDIVLYN 124
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 43.2 bits (97), Expect = 3e-06
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Frame = +3
Query: 354 CENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLR-------HANIRESESTVRILAD 512
C + D LL+ Y++ P + LT+ ++ N++ T +
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76
Query: 513 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 626
++ +W D +L W+ E+G L V S+ +WRPD+VL N
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYN 115
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 43.2 bits (97), Expect = 3e-06
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Frame = +3
Query: 381 MIDSLLATYDRESPP----DSKIVVNLTLHLRH---ANIRESESTVRILADLQMNWIDKR 539
+ D LL+ Y+R P ++ V + L L N++ T + ++ W D +
Sbjct: 24 LYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVW--VEQEWNDYK 81
Query: 540 LSWNAGEWG-CSTWLVSSERLWRPDVVLLN 626
L WN ++G T V SE +W PD+VL N
Sbjct: 82 LKWNPDDYGGVDTLHVPSEHIWLPDIVLYN 111
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 41.1 bits (92), Expect = 1e-05
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Frame = +3
Query: 381 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLS 545
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 546 WNAGEWGCSTWL-VSSERLWRPDVVLLN 626
W E+G L V S+ +WRPD+VL N
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYN 119
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 41.1 bits (92), Expect = 1e-05
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Frame = +3
Query: 381 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLS 545
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 546 WNAGEWGCSTWL-VSSERLWRPDVVLLN 626
W E+G L V S+ +WRPD+VL N
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYN 119
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 40.3 bits (90), Expect = 2e-05
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Frame = +3
Query: 381 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 545
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 546 WNAGEW-GCSTWLVSSERLWRPDVVLLN 626
WN E+ G ++ +LW+PD+++ N
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYN 145
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 40.3 bits (90), Expect = 2e-05
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Frame = +3
Query: 381 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 545
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 546 WNAGEW-GCSTWLVSSERLWRPDVVLLN 626
WN E+ G ++ +LW+PD+++ N
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYN 145
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 39.9 bits (89), Expect = 3e-05
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 471 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 626
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 77
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 39.9 bits (89), Expect = 3e-05
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 471 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 626
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 77
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 39.9 bits (89), Expect = 3e-05
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 471 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 626
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 77
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 39.9 bits (89), Expect = 3e-05
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 471 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 626
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 77
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 39.9 bits (89), Expect = 3e-05
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 471 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 626
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 77
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 39.9 bits (89), Expect = 3e-05
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 471 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 626
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYN 77
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 38.3 bits (85), Expect = 9e-05
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +3
Query: 435 IVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD 611
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 612 VVLLN 626
+L N
Sbjct: 92 TILYN 96
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 37.9 bits (84), Expect = 1e-04
Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
Frame = +3
Query: 306 IVLSAQFVLAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTL-HLRHANIRE 482
+++SA F + + S E L + L+ + K+ VN L ++ N+ E
Sbjct: 12 LLISAVFCVGLCSEDEERLVRDLFRGYNKLIRPVQNMT---EKVHVNFGLAFVQLINVNE 68
Query: 483 SESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 626
++ L+ W D +L W+ ++ G + +++W+PD+VL N
Sbjct: 69 KNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWKPDIVLFN 117
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 37.5 bits (83), Expect = 2e-04
Identities = 26/105 (24%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Frame = +3
Query: 330 LAIASAAECENATSLSLMIDSLLATYD-RESPPDSK---IVVNLTLHLRHA-NIRESEST 494
+A+A++ + +++ LL TY+ E P ++ +V++ L L ++ E
Sbjct: 10 IALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQL 69
Query: 495 VRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 626
+ L++ W D + WN ++G L + RLW+PDV++ N
Sbjct: 70 LITNLWLKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYN 114
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 32.3 bits (70), Expect = 0.006
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Frame = +3
Query: 369 SLSLMIDSLLATYDRESPPD----SKIVVNLTLHLRHAN-IRESESTVRILADLQMNWID 533
++++++++LL Y+ P + VV + +R + E + + + +W D
Sbjct: 36 NITMVLENLLMNYENNQLPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWRD 95
Query: 534 KRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 626
RLS+ S + ER+WRPD N
Sbjct: 96 SRLSFLGPIKSLSLSIKMLERIWRPDTYFYN 126
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 31.1 bits (67), Expect = 0.013
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Frame = +3
Query: 360 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 527
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67
Query: 528 IDKRLSWNAGEWGCSTWLVSSE---RLWRPDVVLLN 626
D RL++ G T V SE +W PD +N
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVN 102
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 29.9 bits (64), Expect = 0.031
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Frame = +3
Query: 360 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 527
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFW 67
Query: 528 IDKRLSWNAGEWGCSTWLVSSE---RLWRPDVVLLN 626
D RL++ G T V SE +W PD +N
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVN 102
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.8 bits (44), Expect = 8.2
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -2
Query: 578 PSAAAPFPCVPTQS 537
PSA AP P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,237
Number of Sequences: 438
Number of extensions: 4688
Number of successful extensions: 78
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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