Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_D18
         (1120 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical pr...    25   3.8  

>Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical
           protein K02E2.2 protein.
          Length = 1021

 Score = 24.6 bits (51), Expect(2) = 3.8
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 856 FFXXPXPPPPP 888
           FF  P PPPPP
Sbjct: 780 FFALPVPPPPP 790



 Score = 23.4 bits (48), Expect(2) = 3.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 868 PXPPPPPP 891
           P PPPPPP
Sbjct: 790 PVPPPPPP 797


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,890,889
Number of Sequences: 27780
Number of extensions: 180129
Number of successful extensions: 2749
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2153
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3015558362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)