Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_D12
(881 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z37983-1|CAA86061.1| 276|Caenorhabditis elegans Hypothetical pr... 291 3e-79
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 36 0.038
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 36 0.051
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 36 0.051
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 36 0.051
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 36 0.051
Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical pr... 35 0.089
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p... 30 1.9
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr... 30 1.9
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein. 30 1.9
AL031632-6|CAA21008.1| 338|Caenorhabditis elegans Hypothetical ... 29 5.8
U39742-3|AAY86225.1| 188|Caenorhabditis elegans Hypothetical pr... 28 7.7
AL032621-5|CAA21492.2| 404|Caenorhabditis elegans Hypothetical ... 28 7.7
AC084153-15|AAK84589.2| 152|Caenorhabditis elegans Hypothetical... 28 7.7
>Z37983-1|CAA86061.1| 276|Caenorhabditis elegans Hypothetical
protein B0393.1 protein.
Length = 276
Score = 291 bits (715), Expect = 3e-79
Identities = 133/222 (59%), Positives = 170/222 (76%), Gaps = 5/222 (2%)
Frame = +3
Query: 63 MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVL 242
MSGG AL EEDV K+LA HLG+ N+NFQM+ YVYKRR DG ++IN+++TWEKL+L
Sbjct: 1 MSGGAAHSALTEEDVMKLLATQAHLGSTNLNFQMQQYVYKRRFDGPNIINVKKTWEKLLL 60
Query: 243 AARAVVAIENPADVFVISSRPFGQRAVLKFAARTGATPIAGRFTPGAFTNQIQAAFREPR 422
AARA+ A+ENPADV V+S+RP+ QRA+LKFAA TGAT I GRF+PG TNQIQ F+EPR
Sbjct: 61 AARAIAAVENPADVVVVSARPYAQRALLKFAAHTGATAIFGRFSPGCLTNQIQKTFKEPR 120
Query: 423 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 602
LL++ DP DHQ +TEASYV +PVI+ NT+SPL+ +DI +PCN K SIGLMWW+LAR
Sbjct: 121 LLVISDPRIDHQAVTEASYVGVPVISFVNTESPLKLIDIGVPCNNKGERSIGLMWWMLAR 180
Query: 603 EVLRLRGVLPRDQRW-----DVVVDLFFYRXPEESEKDEQQA 713
E+L LRG + R + +++ DL+FYR P E+EK+E A
Sbjct: 181 EILILRGKISRQTGFVLEGKEIMPDLYFYRDPTETEKEETGA 222
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 35.9 bits (79), Expect = 0.038
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +2
Query: 242 GCSCCRSHREPR*CVRHLITALRSACCTEVCRAHR-CYAYCG 364
GC CC + C R T R+ CCT C R C CG
Sbjct: 82 GCGCCCCRPKCCCCCRRCCTCCRTCCCTRCCTCCRPCCCGCG 123
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 35.5 bits (78), Expect = 0.051
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +2
Query: 242 GCSCCRSHREPR*CVRHLITALRSACCTEVCRAHR-CYAYCG 364
GC CC C R T R+ CCT C R C CG
Sbjct: 83 GCGCCCCRPRCCCCCRRCCTCCRTCCCTRCCTCCRPCCCGCG 124
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 35.5 bits (78), Expect = 0.051
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +2
Query: 242 GCSCCRSHREPR*CVRHLITALRSACCTEVCRAHR-CYAYCG 364
GC CC C R T R+ CCT C R C CG
Sbjct: 81 GCGCCCCRPRCCCCCRRCCTCCRTCCCTRCCTCCRPCCCGCG 122
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 35.5 bits (78), Expect = 0.051
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +2
Query: 242 GCSCCRSHREPR*CVRHLITALRSACCTEVCRAHR-CYAYCG 364
GC CC C R T R+ CCT C R C CG
Sbjct: 82 GCGCCCCRPRCCCCCRRCCTCCRTCCCTRCCTCCRPCCCGCG 123
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 35.5 bits (78), Expect = 0.051
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +2
Query: 242 GCSCCRSHREPR*CVRHLITALRSACCTEVCRAHR-CYAYCG 364
GC CC C R T R+ CCT C R C CG
Sbjct: 83 GCGCCCCRPRCCCCCRRCCTCCRTCCCTRCCTCCRPCCCGCG 124
>Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical
protein M02G9.3 protein.
Length = 294
Score = 34.7 bits (76), Expect = 0.089
Identities = 21/73 (28%), Positives = 30/73 (41%)
Frame = +2
Query: 239 SGCSCCRSHREPR*CVRHLITALRSACCTEVCRAHRCYAYCGTFHTRCFY*PDPSCIP*T 418
S SCC S C+ + +S+C T +C+ +C C T PSC
Sbjct: 38 SSSSCCSSSSSNSYCIPVCMAQCQSSCTTPICQ-QQCSNQCNQQCTSITISSGPSCSSCQ 96
Query: 419 SSLDCIGPCTRPS 457
S+ C CT P+
Sbjct: 97 SA--CSSACTTPT 107
>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
protein C47D12.1c protein.
Length = 4053
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +1
Query: 370 SHQVL-LLTRSKLHSVNLVS*LYWTLHKTINPLLKLHMSTFL*LLCATQTPH 522
SH+V+ + + +LHS+NL + LYW L + + + S F+ +LC H
Sbjct: 3338 SHEVMNRVIKKQLHSLNLFNWLYW-LPQLVTDVRYKPNSNFVLILCKMAAAH 3388
>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
C47D12.1b protein.
Length = 4061
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +1
Query: 370 SHQVL-LLTRSKLHSVNLVS*LYWTLHKTINPLLKLHMSTFL*LLCATQTPH 522
SH+V+ + + +LHS+NL + LYW L + + + S F+ +LC H
Sbjct: 3349 SHEVMNRVIKKQLHSLNLFNWLYW-LPQLVTDVRYKPNSNFVLILCKMAAAH 3399
>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
C47D12.1a protein.
Length = 4064
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +1
Query: 370 SHQVL-LLTRSKLHSVNLVS*LYWTLHKTINPLLKLHMSTFL*LLCATQTPH 522
SH+V+ + + +LHS+NL + LYW L + + + S F+ +LC H
Sbjct: 3349 SHEVMNRVIKKQLHSLNLFNWLYW-LPQLVTDVRYKPNSNFVLILCKMAAAH 3399
>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
Length = 4064
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +1
Query: 370 SHQVL-LLTRSKLHSVNLVS*LYWTLHKTINPLLKLHMSTFL*LLCATQTPH 522
SH+V+ + + +LHS+NL + LYW L + + + S F+ +LC H
Sbjct: 3349 SHEVMNRVIKKQLHSLNLFNWLYW-LPQLVTDVRYKPNSNFVLILCKMAAAH 3399
>AL031632-6|CAA21008.1| 338|Caenorhabditis elegans Hypothetical
protein Y32B12B.6 protein.
Length = 338
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +1
Query: 289 SSHHGPSVSVLY*SLPRAPVLRLLRDVSHQVLLLTRSKLHSVNLVS*LYWTLHKTI 456
S+HH V +L S P L++ + + + + R K H +N S Y TL T+
Sbjct: 100 SAHHMNRVFLLLNSYPENSNLKIEQMLREETSFVARQKYHEMNWDSWYYITLVSTV 155
>U39742-3|AAY86225.1| 188|Caenorhabditis elegans Hypothetical
protein C25F6.8 protein.
Length = 188
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 504 CNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVL 611
CNTD+ R + CNT + +G+ + L+AR ++
Sbjct: 49 CNTDAEFRLIQCCSSCNT---NGVGIAYDLVARSLV 81
>AL032621-5|CAA21492.2| 404|Caenorhabditis elegans Hypothetical
protein Y45F3A.8 protein.
Length = 404
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = +2
Query: 476 ICQHSCDCFVQHRLPTKICGHCYPM---QHQVFPLYWFD 583
+C+HS + K CGHC PM +HQ P + D
Sbjct: 342 LCEHSRYKTLMENYCPKACGHCIPMCRDRHQNCPQFHED 380
>AC084153-15|AAK84589.2| 152|Caenorhabditis elegans Hypothetical
protein Y22D7AL.15 protein.
Length = 152
Score = 28.3 bits (60), Expect = 7.7
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 4/111 (3%)
Frame = +3
Query: 276 ADVFVISSRPFGQRAVLKFAARTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 455
A V+ +++ P A + G P+A P Q A+ +P ++ A
Sbjct: 7 AQVYPVATGPQMDSAPPPYTV-VGGAPVAVEMQPVYAAYPQQQAYGQPTVV----QAHVV 61
Query: 456 QPITEASYVNIPVIALCNTDSPLRFVDIAIPCNT----KSSHSIGLMWWLL 596
Q T+A+ + + + D P +++ C T ++ HSIG WW++
Sbjct: 62 QQPTQATVIISASVKHVDQDKP--YLEYCPRCQTSVTTRTVHSIGTCWWII 110
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,721,461
Number of Sequences: 27780
Number of extensions: 475468
Number of successful extensions: 1208
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -