Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_D09
(870 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 181 1e-46
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 89 1e-18
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 57 3e-09
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 55 2e-08
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 54 3e-08
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 53 5e-08
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 53 5e-08
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 53 6e-08
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 48 2e-06
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 47 3e-06
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 46 5e-06
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 44 3e-05
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 44 3e-05
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 44 3e-05
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 42 2e-04
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 42 2e-04
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 41 3e-04
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 40 6e-04
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 39 8e-04
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 38 0.001
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 37 0.003
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 36 0.007
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 36 0.007
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 35 0.013
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 33 0.070
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 33 0.070
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 33 0.070
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 33 0.070
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 31 0.16
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.21
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 29 0.86
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 29 1.1
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 28 1.5
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 28 2.0
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 27 2.6
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 27 3.5
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 27 4.6
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 26 8.0
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 181 bits (440), Expect = 1e-46
Identities = 82/143 (57%), Positives = 113/143 (79%), Gaps = 1/143 (0%)
Frame = +3
Query: 231 YGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAHQK-NLDVGANVFIGNLDPEVDEK 407
+GF EF+ E+D +YA +++N +KL+GKP+RVN+AS + N +GAN+F+GNLDP VDE+
Sbjct: 54 FGFCEFLHEQDVEYACQILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDER 113
Query: 408 LLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQYLCNRPISV 587
+LYDTFSA G +++ P+V RD E G SK + F+++ SFE +DAAIEAMNNQ+L N+PI+V
Sbjct: 114 VLYDTFSALGQLVKAPQVARD-ENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITV 172
Query: 588 SYAFXKDVKGXRHGSAAERLLAA 656
SYAF ++ KG RHG AER LAA
Sbjct: 173 SYAFKREGKGERHGDIAERKLAA 195
Score = 78.6 bits (185), Expect = 1e-15
Identities = 31/52 (59%), Positives = 44/52 (84%)
Frame = +2
Query: 86 ERNQDATIYVGGLDDRVTESLLWELFVQSGPVVNVHMPKDRVTQTHQGLWIC 241
+RNQDATIY+G LD++VT+S+L+EL +Q+GPVVN+H+P+DRV +H G C
Sbjct: 6 DRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFC 57
Score = 37.5 bits (83), Expect = 0.002
Identities = 20/78 (25%), Positives = 38/78 (48%)
Frame = +3
Query: 363 ANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAI 542
A +++GNLD +V + +L++ G ++ + RD + F F F + + A
Sbjct: 11 ATIYLGNLDEKVTDSILFELCLQAGPVVNI-HIPRDRVRNSHNGFGFCEFLHEQDVEYAC 69
Query: 543 EAMNNQYLCNRPISVSYA 596
+ +N L +PI V+ A
Sbjct: 70 QILNQVKLFGKPIRVNRA 87
Score = 31.9 bits (69), Expect = 0.12
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +3
Query: 225 RXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKA 332
+ YGFV + E AD AI+ MN L KP+ V+ A
Sbjct: 140 KGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYA 175
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 88.6 bits (210), Expect = 1e-18
Identities = 49/122 (40%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
Frame = +3
Query: 231 YGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAHQKNLDVGA-NVFIGNLDPEVDEK 407
Y +V F ED + A+ +N + G+P R+ + +G NVFI NLDP +D K
Sbjct: 123 YAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNK 182
Query: 408 LLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQYLCNRPISV 587
L+DTFSAFG IL KV D E GN+K + F++F S E+++AAIE +N L ++ + V
Sbjct: 183 ALHDTFSAFGKILSC-KVAVD-ELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYV 240
Query: 588 SY 593
+
Sbjct: 241 GH 242
Score = 69.7 bits (163), Expect = 5e-13
Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 17/147 (11%)
Frame = +3
Query: 225 RXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASA-HQKNLDV-------------- 359
R +GFV + E A A+ +N + GK + V +A H++ ++
Sbjct: 301 RGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNK 360
Query: 360 --GANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASD 533
G N+FI NL EVD++ L FSAFG I + K+M D E G SK F F+ + + E ++
Sbjct: 361 YQGVNLFIKNLQDEVDDERLKAEFSAFGTI-TSAKIMTD-EQGKSKGFGFVCYTTPEEAN 418
Query: 534 AAIEAMNNQYLCNRPISVSYAFXKDVK 614
A+ MN + L +P+ V+ A K+V+
Sbjct: 419 KAVTEMNQRMLAGKPLYVALAQRKEVR 445
Score = 59.3 bits (137), Expect = 7e-10
Identities = 42/141 (29%), Positives = 72/141 (51%), Gaps = 7/141 (4%)
Frame = +3
Query: 204 IE*LRHIRXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRV-NKASAHQKNLDVGA----- 365
++ L + + YGFV F E A+ AI+ +N + L K V V + S ++ V A
Sbjct: 201 VDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANF 260
Query: 366 -NVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAI 542
NV+I NLD E+ E+ D F FG I +++D + + F F+N+A+ E + A+
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSL-SLVKD-QNDKPRGFGFVNYANHECAQKAV 318
Query: 543 EAMNNQYLCNRPISVSYAFXK 605
+ +N++ + + V A K
Sbjct: 319 DELNDKEYKGKKLYVGRAQKK 339
Score = 55.6 bits (128), Expect = 9e-09
Identities = 24/95 (25%), Positives = 49/95 (51%)
Frame = +3
Query: 312 PVRVNKASAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSK 491
P + + A++++G LDP V E +L++ F++ G + +V RD T S
Sbjct: 63 PTNASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASI-RVCRDAVTRRSL 121
Query: 492 AFAFINFASFEASDAAIEAMNNQYLCNRPISVSYA 596
+A++NF + E + A++ +N + RP + ++
Sbjct: 122 GYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWS 156
Score = 45.2 bits (102), Expect = 1e-05
Identities = 22/53 (41%), Positives = 32/53 (60%)
Frame = +2
Query: 71 AGPIAERNQDATIYVGGLDDRVTESLLWELFVQSGPVVNVHMPKDRVTQTHQG 229
A P A++YVG LD VTE++L+ELF GPV ++ + +D VT+ G
Sbjct: 70 ATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLG 122
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 107 IYVGGLDDRVTESLLWELFVQSGPVVNVHMPKDR 208
+Y+ LD +TE +LF Q G + ++ + KD+
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQ 296
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 57.2 bits (132), Expect = 3e-09
Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 6/131 (4%)
Frame = +3
Query: 231 YGFVEFMGEEDADYAIKVMNM-IKLYGKPVRVNKASA---HQKNLDVGA--NVFIGNLDP 392
Y FVEF +A A+ + N I ++N AS +K++ + ++F+G+L P
Sbjct: 136 YCFVEFASPHEASSAMSMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSP 195
Query: 393 EVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQYLCN 572
V+E +Y F++ ++ K+M DP+T S+ + F+ F +A+ M Q +
Sbjct: 196 NVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGD 255
Query: 573 RPISVSYAFXK 605
RPI V A K
Sbjct: 256 RPIRVGLATPK 266
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +3
Query: 225 RXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAHQK 347
R YGFV F E D A+ M +P+RV A+ K
Sbjct: 228 RGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSK 268
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 54.8 bits (126), Expect = 2e-08
Identities = 31/78 (39%), Positives = 42/78 (53%)
Frame = +3
Query: 363 ANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAI 542
A V +GNL P V E LLY+ F FG I+ + E +++AF+ F E + A+
Sbjct: 6 ATVHVGNLAPSVTESLLYNAFIPFGEIISV--ALHRKEKAVDRSYAFVEFDEPEDAKEAM 63
Query: 543 EAMNNQYLCNRPISVSYA 596
E MN LC+R I VS A
Sbjct: 64 ENMNYSILCDRCIRVSPA 81
Score = 33.5 bits (73), Expect = 0.040
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +2
Query: 101 ATIYVGGLDDRVTESLLWELFVQSGPVVNV 190
AT++VG L VTESLL+ F+ G +++V
Sbjct: 6 ATVHVGNLAPSVTESLLYNAFIPFGEIISV 35
Score = 29.5 bits (63), Expect = 0.65
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +3
Query: 225 RXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKAS 335
R Y FVEF EDA A++ MN L + +RV+ A+
Sbjct: 46 RSYAFVEFDEPEDAKEAMENMNYSILCDRCIRVSPAN 82
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 54.0 bits (124), Expect = 3e-08
Identities = 27/82 (32%), Positives = 46/82 (56%)
Frame = +3
Query: 348 NLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEA 527
++ G VF+GN+ +V E+ + + F+ G + +T K++ DPETG+ K + F F E
Sbjct: 2 SMTAGNVVFVGNIPYDVSEQQMTEIFNQVGPV-KTFKLVLDPETGSGKGYGFCEFFDSET 60
Query: 528 SDAAIEAMNNQYLCNRPISVSY 593
+ A+ +NN L R I V +
Sbjct: 61 TAMAVRKLNNSELGPRKIRVEF 82
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 107 IYVGGLDDRVTESLLWELFVQSGPVVNVHMPKDRVTQTHQGLWIC 241
++VG + V+E + E+F Q GPV + D T + +G C
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFC 53
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 225 RXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRV 323
+ YGF EF E A++ +N +L + +RV
Sbjct: 48 KGYGFCEFFDSETTAMAVRKLNNSELGPRKIRV 80
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 53.2 bits (122), Expect = 5e-08
Identities = 31/88 (35%), Positives = 50/88 (56%)
Frame = +3
Query: 330 ASAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFIN 509
+S HQ D A ++IGNLD +++E + FS FG + ++RD ETG SK FAF+
Sbjct: 21 SSWHQDYSD-SAYIYIGNLDFDLNEDDILCVFSEFGEPVDI-NLVRDKETGKSKGFAFLK 78
Query: 510 FASFEASDAAIEAMNNQYLCNRPISVSY 593
+ ++ A++ M N L +R + V +
Sbjct: 79 YEDQRSTVLAVDNMTNVKLLDRLVRVDH 106
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 53.2 bits (122), Expect = 5e-08
Identities = 26/88 (29%), Positives = 51/88 (57%)
Frame = +3
Query: 333 SAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINF 512
SA + + ++G ++F+ + + E L FS FG + ++MR+P T S+ F F++F
Sbjct: 91 SAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHV-RIMREPVTKASRGFGFLSF 149
Query: 513 ASFEASDAAIEAMNNQYLCNRPISVSYA 596
++ E + +AI+ +N+Q R ++V A
Sbjct: 150 STVEEATSAIDNLNSQEFYGRVLNVQKA 177
Score = 30.3 bits (65), Expect = 0.37
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 225 RXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKA 332
R +GF+ F E+A AI +N + YG+ + V KA
Sbjct: 142 RGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKA 177
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 52.8 bits (121), Expect = 6e-08
Identities = 29/82 (35%), Positives = 50/82 (60%)
Frame = +3
Query: 369 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 548
+F+GNL +V+++ LY FS + +++T KV+RD E G ++ F F++F + A
Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKT-KVVRDRE-GKTRGFGFVSFKDSDQFLKAWRE 89
Query: 549 MNNQYLCNRPISVSYAFXKDVK 614
N +Y+ +RP+ +S A DVK
Sbjct: 90 KNGKYIGSRPVKLSRA-TSDVK 110
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 47.6 bits (108), Expect = 2e-06
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Frame = +3
Query: 321 VNKASAHQKNLDVGANV-FIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAF 497
+ K + KNL V ++G L EK + FS FG +L+ ++ R+ +TG+SK +
Sbjct: 90 IKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRL-RMSRNRKTGSSKHY 148
Query: 498 AFINFASFEASDAAIEAMNNQYL 566
AFI F S + ++ E M+N L
Sbjct: 149 AFIEFESLDVANVVAETMHNYLL 171
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 89 RNQDATIYVGGLDDRVTESLLWELFVQSGPVVNVHMPKDRVT 214
+ + +YVG L E + F Q GPV+ + M ++R T
Sbjct: 101 QKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKT 142
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 47.2 bits (107), Expect = 3e-06
Identities = 25/93 (26%), Positives = 49/93 (52%)
Frame = +3
Query: 309 KPVRVNKASAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNS 488
+P ++ K S VF+G L VD++ L F +G I+ +V+ D ++G S
Sbjct: 248 RPAKITKPSQDSNET---CTVFVGRLSWNVDDQWLGQEFEEYGTIVGA-RVIMDGQSGRS 303
Query: 489 KAFAFINFASFEASDAAIEAMNNQYLCNRPISV 587
K + +++F + EA+ AA+ A + + R +++
Sbjct: 304 KGYGYVDFETPEAAKAAVAANGTKEIDGRMVNL 336
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 46.4 bits (105), Expect = 5e-06
Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 11/135 (8%)
Frame = +3
Query: 225 RXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVN-KASAHQKNLDVGAN----------V 371
R G V ++A +AI++++ G+ + V AH K D+ + +
Sbjct: 223 RGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVRLDRFAHHKIEDLVYHAYPHGPCSDCI 282
Query: 372 FIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAM 551
++GNL ++ L D F+ G +++ ++ +P TG SK F + F + + ++IE +
Sbjct: 283 YVGNLPWATSDRNLLDLFTDIGSVIRA-RIAYEP-TGRSKGFGVVQFENENDAASSIEKL 340
Query: 552 NNQYLCNRPISVSYA 596
N RP+ +SYA
Sbjct: 341 NGYRYGGRPLQLSYA 355
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 44.0 bits (99), Expect = 3e-05
Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 18/146 (12%)
Frame = +3
Query: 225 RXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAHQKN-LDVGAN----------- 368
R YGFV F EDA A K + KL+G+ +R++ A+ +++ +D N
Sbjct: 46 RGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDN 105
Query: 369 ---VFIGNLDPEVDE-KLLYDTFSAFGVILQTPKVMRDPETGNSK--AFAFINFASFEAS 530
+ I NL + + + L FS FG + + ++ P G + FAF+ +A+
Sbjct: 106 RPRLIIRNLPWSIKKPQHLEPHFSKFGKVRE----IKIPTKGGGRMCGFAFVWMKDRKAA 161
Query: 531 DAAIEAMNNQYLCNRPISVSYAFXKD 608
+ A+ ++N + RPI+V +A KD
Sbjct: 162 EEAMNSLNGTEIDGRPIAVDWAVSKD 187
Score = 33.5 bits (73), Expect = 0.040
Identities = 26/81 (32%), Positives = 35/81 (43%)
Frame = +3
Query: 369 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 548
VF+ NL E E+ LY+ F FG L K+++DP T S FI F + +E
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGP-LAYAKLVKDPATDRSLGRGFIKFRYEKDCQNCLE- 336
Query: 549 MNNQYLCNRPISVSYAFXKDV 611
M +Q P F V
Sbjct: 337 MASQLPTQEPTEAEKRFLPSV 357
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 44.0 bits (99), Expect = 3e-05
Identities = 26/76 (34%), Positives = 43/76 (56%)
Frame = +3
Query: 369 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 548
+F+ L+P ++ L FS FG I+ +V+RD ETG+S +AFI F + E+ + A
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISC-QVIRDKETGDSLQYAFIEFDNKESVEKAYFK 304
Query: 549 MNNQYLCNRPISVSYA 596
M N + + I V ++
Sbjct: 305 MQNVLIDDSRIHVDFS 320
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 44.0 bits (99), Expect = 3e-05
Identities = 31/102 (30%), Positives = 48/102 (47%)
Frame = +3
Query: 237 FVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAHQKNLDVGANVFIGNLDPEVDEKLLY 416
++ F A A+ +N + +RV+ S H D VF+GNL E +E+ L+
Sbjct: 230 YIVFRDSSSARSALS-LNGTMFMDRHLRVDSVS-HPMPQDTKRCVFVGNLAFEAEEEPLW 287
Query: 417 DTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAI 542
F G I +++RDP+T K FA+I F D A+
Sbjct: 288 RYFGDCGSI-DYVRIVRDPKTNLGKGFAYIQFKDTMGVDKAL 328
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 41.5 bits (93), Expect = 2e-04
Identities = 26/99 (26%), Positives = 48/99 (48%)
Frame = +3
Query: 369 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 548
VF+ L + + LYD F G + + +++RD +G SK A++ F ++ AAI A
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPV-RDAQIVRDKISGRSKGVAYVEFCHEDSVQAAI-A 299
Query: 549 MNNQYLCNRPISVSYAFXKDVKGXRHGSAAERLLAAQNP 665
++ + L P+ V + + R + R +A+ P
Sbjct: 300 LSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIP 338
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 41.5 bits (93), Expect = 2e-04
Identities = 39/154 (25%), Positives = 69/154 (44%), Gaps = 10/154 (6%)
Frame = +3
Query: 231 YGFVEFMGEEDADYAIKVMNMIKLYGKPVRVN------KASAHQKNLD----VGANVFIG 380
+GFVEF + A A+ MN L G + + A+A + D G + I
Sbjct: 667 FGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKPKGTKILIK 726
Query: 381 NLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQ 560
NL E +K + A+G L++ +V + + +++ FAF F + + A+ A+ N
Sbjct: 727 NLPFEATKKDVQSLLGAYGQ-LRSVRVPKKFDR-SARGFAFAEFVTAREAANAMRALKNT 784
Query: 561 YLCNRPISVSYAFXKDVKGXRHGSAAERLLAAQN 662
+L R + + YA + +H A E++ N
Sbjct: 785 HLLGRHLVLQYASNATMDDMQH--AIEKMAKEAN 816
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 40.7 bits (91), Expect = 3e-04
Identities = 21/48 (43%), Positives = 27/48 (56%)
Frame = +3
Query: 369 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINF 512
+FIG L+ E + L D F FG +L VMRD TG S+ F F+ F
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCT-VMRDSTTGRSRGFGFLTF 211
Score = 38.7 bits (86), Expect = 0.001
Identities = 31/130 (23%), Positives = 63/130 (48%), Gaps = 3/130 (2%)
Frame = +3
Query: 225 RXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAHQKNLDVGANVFIGNLDPEVDE 404
R +GF+ F + + + + L GK + +A ++ + A +F+G + + E
Sbjct: 204 RGFGFLTFKNPKCVNEVMSKEH--HLDGKIIDPKRAIPREEQ-EKTAKMFVGGVPGDCTE 260
Query: 405 KLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA-MNNQYLC--NR 575
+ + F+ FG +L +M D +TG + F F+ + +++A+EA M+ Y+ +
Sbjct: 261 EEFRNFFNQFGRVLDAT-LMMDKDTGRPRGFGFVTY----ENESAVEATMSQPYITIHGK 315
Query: 576 PISVSYAFXK 605
P+ V A K
Sbjct: 316 PVEVKRATPK 325
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 39.5 bits (88), Expect = 6e-04
Identities = 26/72 (36%), Positives = 38/72 (52%)
Frame = +3
Query: 333 SAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINF 512
S ++ D A + + NL + E+ L D F FG I Q + +D ETG +K FAF+
Sbjct: 192 SMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGI-QRVYLAKDKETGRAKGFAFV-- 248
Query: 513 ASFEASDAAIEA 548
S+ D AI+A
Sbjct: 249 -SYYDRDCAIKA 259
Score = 32.3 bits (70), Expect = 0.092
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +2
Query: 86 ERNQDATIYVGGLDDRVTESLLWELFVQSGPVVNVHMPKDRVTQTHQG 229
ER+ AT+ V L D E L +LF + G + V++ KD+ T +G
Sbjct: 197 ERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKG 244
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 39.1 bits (87), Expect = 8e-04
Identities = 22/78 (28%), Positives = 38/78 (48%)
Frame = +3
Query: 330 ASAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFIN 509
AS + + +F+GNLD E + L + F G I + ++M +TG K F F++
Sbjct: 217 ASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRV-RLMTFEDTGKCKGFGFVD 275
Query: 510 FASFEASDAAIEAMNNQY 563
F + A+E +N +
Sbjct: 276 FPDIDTCMKAMELGHNSW 293
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 38.3 bits (85), Expect = 0.001
Identities = 20/75 (26%), Positives = 37/75 (49%)
Frame = +3
Query: 369 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 548
V++GN+ E+ E+ + D F G + V+ DPE+G K + F + + +A+
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVI-DPESGQPKGYGFCEYHDPATAASAVRN 65
Query: 549 MNNQYLCNRPISVSY 593
+NN R + V +
Sbjct: 66 LNNYDAGTRRLRVDF 80
Score = 30.3 bits (65), Expect = 0.37
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +2
Query: 92 NQDATIYVGGLDDRVTESLLWELFVQSGPVVNVHMPKDRVTQTHQGLWIC 241
N +YVG + + E + ++F QSGPV + + D + +G C
Sbjct: 2 NPSCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFC 51
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 37.1 bits (82), Expect = 0.003
Identities = 22/75 (29%), Positives = 40/75 (53%)
Frame = +3
Query: 366 NVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIE 545
+V++GN+D V + L F++ G + + ++ D TG+ K FA+I F+ A+
Sbjct: 56 SVYVGNVDYSVTPEELQSHFASCGSVNRVT-ILCDKFTGHPKGFAYIEFSEPSLVPNAL- 113
Query: 546 AMNNQYLCNRPISVS 590
+N L RP+ V+
Sbjct: 114 LLNGSMLHERPLKVT 128
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 35.9 bits (79), Expect = 0.007
Identities = 25/79 (31%), Positives = 38/79 (48%)
Frame = +3
Query: 369 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 548
+ + L PE+ E+ + A G + T ++R+ ET S+ FAF F S + S +EA
Sbjct: 73 IILQGLTPEILEEHIELALYATGAKVSTVTLIREKETQKSRCFAFAKFVSLQDSKDWMEA 132
Query: 549 MNNQYLCNRPISVSYAFXK 605
N L I VS F +
Sbjct: 133 -NFPTLVIDGIDVSVRFSR 150
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 35.9 bits (79), Expect = 0.007
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Frame = +3
Query: 366 NVFIGNLDPEV--DEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFA-SFEASDA 536
N+F+ NLD + + + L + FS FG I ++ + P T SK + F++F+ FEA
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRI-KSCTLASYPSTEISKGYGFVSFSHPFEAVQ- 477
Query: 537 AIEAMNNQYLCNRPISVSYAFXKDVKGXR 623
AI +N + + V+YA ++ + R
Sbjct: 478 AINTLNGVLFGKKRLFVNYAEKREDRKKR 506
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 35.1 bits (77), Expect = 0.013
Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 2/114 (1%)
Frame = +3
Query: 369 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 548
+++GNL V + TFSA+G + + + K AF+NF S E + +E
Sbjct: 589 LWVGNLPSGVSATTVATTFSAYGTVSSIRML-------SHKHSAFLNFDSVETAKHVLEE 641
Query: 549 MNNQ--YLCNRPISVSYAFXKDVKGXRHGSAAERLLAAQNPLSHADRPHQLFAD 704
+N + + + P+ +S+A SA + L A + +S +++ D
Sbjct: 642 LNGKRIFFGSDPVCISFAKVASSSSESSHSAVDGLNKAFSNVSFVPSLREVYDD 695
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 32.7 bits (71), Expect = 0.070
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Frame = +3
Query: 240 VEFMGEEDADYAIKVMNMIKLY-GKPVRVNKASAHQKNLDVGANVFIGNLDPEVDEKLLY 416
+EF ++ A A++ + +L G P+ ++ QK +FI N+DPEV E +
Sbjct: 33 IEFESQDAARNALERQSTQRLISGNPISLDVVPEWQKPSYY--MLFISNIDPEVSENDIK 90
Query: 417 DTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQYLCNRPISV 587
F + I + +V+R + G S + AFI A+ A M + R I V
Sbjct: 91 YLFQRYNFI--SARVLRCVD-GTSTSIAFIWLANESDIQNAQVEMQGAFCLKRSILV 144
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 32.7 bits (71), Expect = 0.070
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 225 RXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKAS 335
R YGFV F E++ +A+ M G+P+R++ AS
Sbjct: 224 RKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVAS 260
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 32.7 bits (71), Expect = 0.070
Identities = 27/96 (28%), Positives = 37/96 (38%), Gaps = 7/96 (7%)
Frame = +3
Query: 330 ASAHQKNLDVGA----NVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNS--- 488
ASA Q N VF+G L + + F G + + R G
Sbjct: 29 ASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVP 88
Query: 489 KAFAFINFASFEASDAAIEAMNNQYLCNRPISVSYA 596
AF+ F + E D AIE +N + L +R I V A
Sbjct: 89 SGIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKA 124
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 474 ETGNSKAFAFINFASFEASDAAIEAMNNQYLCNRPISVSYAFXKDVK 614
E + F F++FA+ E AIE MN + + + + V A ++ K
Sbjct: 253 EQRRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFREDK 299
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 32.7 bits (71), Expect = 0.070
Identities = 13/58 (22%), Positives = 28/58 (48%)
Frame = +3
Query: 351 LDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFE 524
+++ +++G L ++ L FS FG + + + G + FA++NF + E
Sbjct: 1 MELEKRIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDE 58
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 31.5 bits (68), Expect = 0.16
Identities = 23/83 (27%), Positives = 37/83 (44%)
Frame = +3
Query: 369 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 548
+F+ L + E + F+ +G I + +V+R+ TG S +AF+ F A +A
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPI-ERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKA 160
Query: 549 MNNQYLCNRPISVSYAFXKDVKG 617
L R I V + VKG
Sbjct: 161 SAGLMLNGRRIVVDVERGRTVKG 183
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 31.1 bits (67), Expect = 0.21
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 107 IYVGGLDDRVTESLLWELFVQSGPVVNVHMPKDRVT 214
I V G+ TE + +LF GPV N+H+ DR T
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 29.1 bits (62), Expect = 0.86
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +3
Query: 348 NLDVGANVFIGNLDPEVDEKLLYDTFSAFGVI 443
N NVFIGNL EK + + F FG I
Sbjct: 294 NTAASRNVFIGNLPSSYHEKEIEEAFGKFGKI 325
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 225 RXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAHQ 344
R Y FV+F +DA A+ L G+ +R+ +A ++
Sbjct: 121 RPYSFVQFQNTDDASKALSEAQNTILDGRHIRIERAKVNR 160
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 28.3 bits (60), Expect = 1.5
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Frame = +3
Query: 369 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINF-------ASFEA 527
VF+ N+ P V + L F +FG + + +P TG S I+F + +
Sbjct: 96 VFVSNISPLVTSEQLRYHFKSFGEVFDL-DLKLNPYTGTSLGLCCISFDKRSSISVAAHS 154
Query: 528 SDAAIEAMNNQYLCNRPISV 587
+ A++ N +P+SV
Sbjct: 155 AKIAVQQANGLRFSGKPLSV 174
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 27.9 bits (59), Expect = 2.0
Identities = 19/65 (29%), Positives = 32/65 (49%)
Frame = +3
Query: 366 NVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIE 545
N++IGN D + + L + F FG I + R+ K AF+NF S ++ AI+
Sbjct: 415 NIYIGNADDSLTIERLKEDFEEFGEI-EYVNFFRE------KNCAFVNFTSLASAINAID 467
Query: 546 AMNNQ 560
+ +
Sbjct: 468 RIKQK 472
Score = 25.8 bits (54), Expect = 8.0
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +3
Query: 366 NVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIE 545
NVF+GNL + E + + FG I Q K++ + + AF++F + A+ A++
Sbjct: 207 NVFLGNLPNGITEDEIREDLEPFGPIDQI-KIVTE------RNIAFVHFLNIAAAIKAVQ 259
Query: 546 AM 551
+
Sbjct: 260 EL 261
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.5 bits (58), Expect = 2.6
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 369 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSK-AFAFINFASFEASDAAIE 545
+FIGN+ E+D+ + G + +V + NS +F F F S E A+E
Sbjct: 141 LFIGNIPKELDDFWMDKILRLSGKLASWRRVA---DADNSMTSFGFAEFESNEQFSRALE 197
Query: 546 AMNN 557
A+N+
Sbjct: 198 ALND 201
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 222 IRXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRV 323
+R FV F E+A A+K + LYGKP+ +
Sbjct: 67 MRGQAFVVFDNLENASRALKDLQGYPLYGKPMMI 100
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 26.6 bits (56), Expect = 4.6
Identities = 24/80 (30%), Positives = 35/80 (43%)
Frame = -3
Query: 616 PFTSXLNAYETDIGLLHRYWLFIASIAASEASNDAKLIKAKAFEFPVSGSLITLGVCNIT 437
PFT L + D LL I ++ E N+ K+ F P+S L+ + I
Sbjct: 357 PFT--LKRLQKDFQLLKAK--LICALREWEEDNEKKIY---VFGKPLSSRLLMIHSPPIL 409
Query: 436 PNAENVSYNNFSSTSGSKFP 377
N EN+S N+ S +S P
Sbjct: 410 QNQENISSNDNSKSSPESSP 429
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 8.0
Identities = 17/67 (25%), Positives = 29/67 (43%)
Frame = +3
Query: 342 QKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASF 521
Q N + +VF+ N+ PE + L S FG + + E K A+++F +
Sbjct: 308 QSNELLETSVFVKNIPPETSDVSLKSAMSIFGPV-------KAIEFARRKGTAYVDFVNH 360
Query: 522 EASDAAI 542
E A+
Sbjct: 361 ECVQLAL 367
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,206,090
Number of Sequences: 5004
Number of extensions: 62972
Number of successful extensions: 272
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -