Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_D09
         (870 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.6  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   4.8  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    23   4.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   8.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
 Frame = +3

Query: 270  YAIKVMNMIKLYGKPVRVNKASAHQKNLDVGANVFIGNLDPEVDEK-LLYDTFSAFGVIL 446
            + IK+ N     G+P  +   +  +K + +  N+    LDP+ D +  + +   A GV+ 
Sbjct: 779  FEIKLKNQTARRGEPAVLQCEAQGEKPIGILWNMNNKRLDPKSDSRYTIREEILANGVL- 837

Query: 447  QTPKVMRDPETGNSKAFAFINFASFEASDAAI 542
             +   ++  E  +S  F  +   +F + D +I
Sbjct: 838  -SDLSIKRTERSDSALFTCVATNAFGSDDTSI 868



 Score = 22.2 bits (45), Expect = 6.4
 Identities = 11/35 (31%), Positives = 13/35 (37%)
 Frame = +3

Query: 609  VKGXRHGSAAERLLAAQNPLSHADRPHQLFADAPP 713
            +K      A E     +N   H    HQL   APP
Sbjct: 1333 IKEVDRTDAGEYSCYVENTFGHDTVTHQLIVHAPP 1367


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 507 NFASFEASDAAIEAMNNQYLCNRPISV 587
           NF S E   AAI++    Y  N PI V
Sbjct: 44  NFGSDEKRQAAIQSGEYNYKNNVPIDV 70


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +2

Query: 269 LCNKGHEHDKTIWKACKSEQSISTSEELGCGSKCVHWKL 385
           LC++    D +  K+     S    ++LGC   CV  KL
Sbjct: 25  LCSQKAGFDLSDLKSMYESNSEEQMKKLGCFEACVFQKL 63


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 493 AFEFPVSGSLITLGVCNI 440
           A  F  +G LITL VC +
Sbjct: 660 AMSFSATGILITLFVCGV 677


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,269
Number of Sequences: 438
Number of extensions: 4295
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)