Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_D06
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    30   0.50 
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    27   4.7  
SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...    26   6.2  
SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po...    26   8.2  

>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 376 TARAGSFPFPRRLPFSRHRHSPPLLLAVLQHRGVTNP 486
           T R+ S  FP   PFSR  H   ++  +LQH     P
Sbjct: 872 TIRSPSISFPSTFPFSRASHEFKVIHCLLQHDPTKRP 908


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +1

Query: 487 ILSGASPFGEFNKSPGAAPPGQEDSKMSEDCISESASDIVGFLRDRYPSIRXEYL 651
           + S ASPF   N++P A PP  ++ +      + S  D+V     + P I  E+L
Sbjct: 154 VKSSASPFVP-NQNPSAPPPPPQEYRQLNVTDALSYLDLVKLQFHQEPEIYNEFL 207


>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 548 PGGAAPGLLLNSPKGEA--PDRIGFVTPLCCRTARSRGGE 435
           P GAA GL L+  + +      I   TPL C  AR+RG +
Sbjct: 263 PAGAAVGLPLSDVEKKVYFVSDITEFTPLACAYARARGAD 302


>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 451

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
 Frame = +1

Query: 430 RHSPPLLLAVLQH---RGVTNPILSGASPFGEFNKSPGAAPP--GQEDS 561
           R S P+   V  H   + + N  +S A PF   +    A PP  GQ+DS
Sbjct: 157 RASSPVTRVVAVHDNKKKIINSNISNAPPFNNTDVQASARPPAAGQDDS 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,995,190
Number of Sequences: 5004
Number of extensions: 61403
Number of successful extensions: 149
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)