Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_D06
(882 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1370 + 26091340-26091489,26095713-26095817,26096693-260967... 31 1.2
12_01_0132 - 990833-991287,991470-991593,991987-991991,992628-99... 30 2.1
11_06_0509 - 24411655-24411990 30 2.1
06_03_0801 + 24714725-24715501 30 2.1
04_04_0808 - 28196563-28196735,28197369-28197440,28197540-281976... 29 3.7
08_02_1484 - 27453400-27453729 29 4.9
06_03_0634 + 22963211-22963270,22963532-22963628,22964604-229647... 29 4.9
05_04_0303 - 20010761-20011756 29 4.9
11_01_0121 - 948450-948904,949073-949224,949389-949449,950201-95... 29 6.5
11_02_0073 - 8020401-8020512,8020594-8020679,8020761-8020921,802... 28 8.6
04_03_0092 + 11079185-11079589,11081319-11081409,11081507-110816... 28 8.6
01_02_0106 - 11175200-11175385,11175463-11175496,11175987-111762... 28 8.6
>07_03_1370 +
26091340-26091489,26095713-26095817,26096693-26096773,
26097588-26097665,26097752-26097811,26097911-26098186,
26098267-26098363,26098468-26098520
Length = 299
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 430 RHSPPLLLAVLQHRGV-TNPILSGASPFGEFNKSPGAAPPGQEDSKMSEDCISE 588
R SP LL L H T+ + G +P FN++P A PP + S+ +D I E
Sbjct: 14 RSSPALLGTPLSHPAPETDSLNPGYAPT-PFNRTPVAPPPSHQLSRKFQDIIEE 66
>12_01_0132 -
990833-991287,991470-991593,991987-991991,992628-992763,
993417-993751,994912-994966
Length = 369
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 169 QATNGSARPHYRIVRTMYSRSLHCRA 92
Q+ GS P YR+ R + + S+HCRA
Sbjct: 328 QSVLGSGLPSYRVNRRLTTNSVHCRA 353
>11_06_0509 - 24411655-24411990
Length = 111
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -2
Query: 488 IGFVTPLCCRTARSRGGECLCRE-NGNRRGKGKEPARA 378
+G VTPL R RS E C E G RR + +EP A
Sbjct: 27 VGRVTPLTMRARRSAWKEGSCGEPKGKRRQRAREPEAA 64
>06_03_0801 + 24714725-24715501
Length = 258
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/65 (26%), Positives = 26/65 (40%)
Frame = -1
Query: 618 PEEPDNVTSTFTDTIFTHLAVFLPGGGGPGTFVELAERRGPG*DRICNPPVLQDSKEQGG 439
P+ P +T D + +H+ PG E A RRG G + + D +G
Sbjct: 63 PKPPVIITRDSPDALHSHIIEVAPGADVAACVAEYARRRGRGVCLMGASGAVADVAVRGA 122
Query: 438 GMPMP 424
P+P
Sbjct: 123 AAPLP 127
>04_04_0808 - 28196563-28196735,28197369-28197440,28197540-28197666,
28198362-28198430,28198517-28198583,28198751-28198872,
28199302-28199412,28199596-28199661,28200156-28200213,
28200307-28200343,28200420-28200513,28200967-28201032,
28201139-28201203,28201352-28201496,28201925-28202074,
28202266-28202335,28202752-28202828,28202919-28202987,
28203798-28203881,28204018-28204061,28204172-28204273,
28204420-28204618,28204672-28204727,28204886-28204958,
28205685-28205771,28205863-28205976,28206985-28207092,
28207183-28207278,28207722-28207787,28208130-28208222,
28208429-28208512,28208961-28209078,28209191-28209267,
28209459-28209641,28210542-28210636,28210903-28211053,
28212218-28212325,28212513-28212612,28212788-28212840,
28214022-28214102
Length = 1269
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 551 CPGGAAPGLLLNSPKGEAPDRIGFVTPLCCRTARSR 444
CPGG G+ + P+G+A +R VT C ++ +
Sbjct: 1186 CPGGVYRGIYITVPRGKAGNRAVAVTDDTCGSSHQK 1221
>08_02_1484 - 27453400-27453729
Length = 109
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 394 FPFPRRLPFSRHRHSPPLLLAVLQ 465
FPFP L +RHRH+P L +++
Sbjct: 26 FPFPTALAAARHRHAPTDLTLMME 49
>06_03_0634 +
22963211-22963270,22963532-22963628,22964604-22964733,
22965132-22965310,22965456-22965583,22965698-22965769,
22966984-22967082
Length = 254
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -1
Query: 609 PDNVTSTFTDTIFTHLAVFLPGGGGPGTFVELAERR 502
P+N F D F ++ PGGG G+++ + +R
Sbjct: 27 PENGIGLFPDVGFAYIGAKAPGGGAVGSYLGMTGKR 62
>05_04_0303 - 20010761-20011756
Length = 331
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/53 (32%), Positives = 20/53 (37%)
Frame = +1
Query: 379 ARAGSFPFPRRLPFSRHRHSPPLLLAVLQHRGVTNPILSGASPFGEFNKSPGA 537
A AG P+P P H H PP + H A P G + PGA
Sbjct: 216 APAGGDPYPPFAPMGGHHHHPPQIGHFHHH--------PAARPLGHYGSGPGA 260
>11_01_0121 -
948450-948904,949073-949224,949389-949449,950201-950336,
951042-951376,952523-952577
Length = 397
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 169 QATNGSARPHYRIVRTMYSRSLHCRA 92
Q+ GS P YR+ R + + +HCRA
Sbjct: 356 QSVLGSGLPSYRVNRRLMTNRVHCRA 381
>11_02_0073 -
8020401-8020512,8020594-8020679,8020761-8020921,
8021196-8021400,8021664-8021697,8022352-8022422,
8023363-8023542,8023625-8023765,8023859-8023975,
8024074-8024469
Length = 500
Score = 28.3 bits (60), Expect = 8.6
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Frame = -1
Query: 546 GGGGPGTFVELAERRGPG*DRI-CNPPVLQDSK-----EQGGGMPMP*KRQSAGKRKGTR 385
GGGGPG + RGP + P VL D + +Q GG+P P + +R G
Sbjct: 427 GGGGPGFNQPMIYGRGPAPAGMRMVPMVLPDGRLGYVLQQPGGIPPPPPMRRGDRRDGGS 486
Query: 384 SG 379
G
Sbjct: 487 RG 488
>04_03_0092 +
11079185-11079589,11081319-11081409,11081507-11081612,
11081694-11081976,11082062-11082210,11083582-11083735,
11083837-11084793
Length = 714
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +1
Query: 487 ILSGASPFGEFNKSPGAAPPGQEDS--KMSEDCISESASDIVGFL 615
I+SG P G N P P D+ +S+ C++ A I GFL
Sbjct: 382 IISGELPSGWDNSLPKYTPENPADATRNLSQQCLNALAKAIPGFL 426
>01_02_0106 -
11175200-11175385,11175463-11175496,11175987-11176247,
11176501-11176831,11176899-11177589,11177611-11178156,
11178441-11178680
Length = 762
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -1
Query: 270 LNVAIGCLEKGSW*GWVRGYKTLAHKNGPRYADRKR 163
L+ A+G E G W G+K HK Y D+ R
Sbjct: 250 LSTALGTPEHGGRMSWKEGFKNDPHKKREAYKDKLR 285
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,196,308
Number of Sequences: 37544
Number of extensions: 550886
Number of successful extensions: 1590
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1590
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -