Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_D06
         (882 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83067-1|CAB05445.1| 1455|Homo sapiens FAA protein.                    31   7.3  
X99226-1|CAA67610.1| 1455|Homo sapiens Fanconi anemia complement...    31   7.3  
AY598423-1|AAS99350.1| 1429|Homo sapiens Fanconi anemia, complem...    31   7.3  
AM774227-1|CAO81740.1|  939|Homo sapiens collagen type VI alpha ...    31   7.3  
AC005360-1|AAC28751.1|  846|Homo sapiens FAA protein.                  31   7.3  

>Z83067-1|CAB05445.1| 1455|Homo sapiens FAA protein.
          Length = 1455

 Score = 30.7 bits (66), Expect = 7.3
 Identities = 20/67 (29%), Positives = 28/67 (41%)
 Frame = +3

Query: 153  DPLVACDLRIEVHFCALKFCNREPTLTNCLFQGNQSLRSASCGTHRLAIS*PFPKTTVFF 332
            D L+ C  R  + FC LKFC    + + C F         SC +  L     F    +F 
Sbjct: 819  DSLLTCRTRDSLFFC-LKFCTAAISYSLCKFSSQSRDTLCSCLSPGLIKKFQFLMFRLFS 877

Query: 333  KTRPPLA 353
            + R PL+
Sbjct: 878  EARQPLS 884


>X99226-1|CAA67610.1| 1455|Homo sapiens Fanconi anemia complementation
            group A protein protein.
          Length = 1455

 Score = 30.7 bits (66), Expect = 7.3
 Identities = 20/67 (29%), Positives = 28/67 (41%)
 Frame = +3

Query: 153  DPLVACDLRIEVHFCALKFCNREPTLTNCLFQGNQSLRSASCGTHRLAIS*PFPKTTVFF 332
            D L+ C  R  + FC LKFC    + + C F         SC +  L     F    +F 
Sbjct: 819  DSLLTCRTRDSLFFC-LKFCTAAISYSLCKFSSQSRDTLCSCLSPGLIKKFQFLMFRLFS 877

Query: 333  KTRPPLA 353
            + R PL+
Sbjct: 878  EARQPLS 884


>AY598423-1|AAS99350.1| 1429|Homo sapiens Fanconi anemia,
           complementation group A protein.
          Length = 1429

 Score = 30.7 bits (66), Expect = 7.3
 Identities = 20/67 (29%), Positives = 28/67 (41%)
 Frame = +3

Query: 153 DPLVACDLRIEVHFCALKFCNREPTLTNCLFQGNQSLRSASCGTHRLAIS*PFPKTTVFF 332
           D L+ C  R  + FC LKFC    + + C F         SC +  L     F    +F 
Sbjct: 793 DSLLTCRTRDSLFFC-LKFCTAAISYSLCKFSSQSRDTLCSCLSPGLIKKFQFLMFRLFS 851

Query: 333 KTRPPLA 353
           + R PL+
Sbjct: 852 EARQPLS 858


>AM774227-1|CAO81740.1|  939|Homo sapiens collagen type VI alpha 6
           protein.
          Length = 939

 Score = 30.7 bits (66), Expect = 7.3
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +1

Query: 469 RGVTNPILSGASPFGEFNKSPGAAPPGQEDSKMSEDCISESASDIVGFLRDRYP 630
           +G    ++S   P GE        PPG++  K ++   S S  +++ ++RDR P
Sbjct: 367 KGARGKMISAGLP-GEMGSPGEPGPPGRKGVKGAKGLASFSTCELIQYVRDRSP 419


>AC005360-1|AAC28751.1|  846|Homo sapiens FAA protein.
          Length = 846

 Score = 30.7 bits (66), Expect = 7.3
 Identities = 20/67 (29%), Positives = 28/67 (41%)
 Frame = +3

Query: 153 DPLVACDLRIEVHFCALKFCNREPTLTNCLFQGNQSLRSASCGTHRLAIS*PFPKTTVFF 332
           D L+ C  R  + FC LKFC    + + C F         SC +  L     F    +F 
Sbjct: 210 DSLLTCRTRDSLFFC-LKFCTAAISYSLCKFSSQSRDTLCSCLSPGLIKKFQFLMFRLFS 268

Query: 333 KTRPPLA 353
           + R PL+
Sbjct: 269 EARQPLS 275


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,688,325
Number of Sequences: 237096
Number of extensions: 2755370
Number of successful extensions: 6335
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6327
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11270645666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)