Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_D06
         (882 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical...    31   0.83 
Z73103-2|CAA97425.2|  400|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z99169-1|CAB16306.2|  966|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AB055112-1|BAB62293.1|  966|Caenorhabditis elegans VHA-7 protein.      28   7.7  

>AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical
            protein Y75B8A.13 protein.
          Length = 1420

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +1

Query: 472  GVTNPILSGASPFGEFNKSPGAAPPGQEDSKMSEDCISESASD 600
            G ++P  +  SP   FN++  A+PP  + S++ E  + +SA++
Sbjct: 992  GSSSPSEASRSPMEAFNEASKASPPPNQGSEIQEAILDQSAAE 1034


>Z73103-2|CAA97425.2|  400|Caenorhabditis elegans Hypothetical
           protein C08F8.3 protein.
          Length = 400

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 505 PFGEFNKSPGAAPPGQEDSKMSEDCISESASDIVGFL-RDR 624
           PF + +K+P  AP  Q   +  + C S   + I  FL RD+
Sbjct: 304 PFAQVSKAPVVAPSSQLQQQQQQPCSSNQTARIGNFLERDQ 344


>Z99169-1|CAB16306.2|  966|Caenorhabditis elegans Hypothetical
           protein C26H9A.1 protein.
          Length = 966

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/42 (33%), Positives = 27/42 (64%)
 Frame = +1

Query: 70  RVSELTVVLDSVVTVNTSCVQFGSADVPIRWSLAICVSRSIF 195
           R+++LTVV+D+  T   + ++  S ++PI W   I + +S+F
Sbjct: 333 RMNDLTVVIDTTQTHRYTILKDMSFEIPI-WLKNIQIQKSVF 373


>AB055112-1|BAB62293.1|  966|Caenorhabditis elegans VHA-7 protein.
          Length = 966

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/42 (33%), Positives = 27/42 (64%)
 Frame = +1

Query: 70  RVSELTVVLDSVVTVNTSCVQFGSADVPIRWSLAICVSRSIF 195
           R+++LTVV+D+  T   + ++  S ++PI W   I + +S+F
Sbjct: 333 RMNDLTVVIDTTQTHRYTILKDMSFEIPI-WLKNIQIQKSVF 373


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,697,625
Number of Sequences: 27780
Number of extensions: 404426
Number of successful extensions: 1020
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)