Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_C19
(881 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1136 + 24218601-24218734,24218769-24219906 34 0.17
11_04_0307 + 16185405-16185713,16185847-16185942,16186626-161867... 33 0.40
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 32 0.53
07_01_0479 + 3606663-3607448 32 0.70
07_03_1747 + 29188568-29188715,29188793-29189541 31 1.6
02_05_0686 - 30900748-30902167,30903442-30904742 31 1.6
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 30 2.1
10_08_0254 + 16236689-16236793,16237760-16237808,16237988-162380... 30 2.1
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 3.7
12_02_1174 - 26696869-26698191 29 4.9
10_08_0880 + 21267034-21267537 29 6.5
07_03_1400 + 26287124-26287298,26287925-26288007,26288141-262882... 29 6.5
03_05_0796 + 27787401-27788831 29 6.5
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 28 8.6
04_03_0747 - 19251617-19251781,19252377-19252502,19252606-192527... 28 8.6
02_04_0264 - 21393029-21393046,21394249-21394814,21395005-21395623 28 8.6
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.6
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 28 8.6
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 33.9 bits (74), Expect = 0.17
Identities = 18/36 (50%), Positives = 18/36 (50%)
Frame = -3
Query: 813 PXXGGXGGGXXGHXXGXKSRAPRGNXGXGXPGRXPG 706
P GG GGG G RAP G G G PGR PG
Sbjct: 172 PPGGGGGGGGPG-------RAPGGGGGGGGPGRAPG 200
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/38 (44%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Frame = -3
Query: 804 GGXGGGXX-----GHXXGXKSRAPRGNXGXGXPGRXPG 706
GG GGG G G R P G G G PGR PG
Sbjct: 150 GGGGGGALARPPGGGRGGALGRPPGGGGGGGGPGRAPG 187
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -3
Query: 795 GGGXXGHXXGXKSRAPRGNXGXGXPGRXPG 706
GGG G G +R P G G G P PG
Sbjct: 94 GGGAPGPLGGGGARPPGGGGGGGPPSLPPG 123
Score = 28.3 bits (60), Expect = 8.6
Identities = 19/60 (31%), Positives = 22/60 (36%)
Frame = -1
Query: 839 PXXXGXTXNPXXGGXGAGXQXTXGXXKAGXXGGTXAPAXQGGXRGXFPGKNIWXIXTGGS 660
P G P GG G G AG GG PA GG G P + + GG+
Sbjct: 100 PLGGGGARPPGGGGGGGPPSLPPG---AGGGGGARPPAPGGGGGGGAPRRVLGGGGGGGA 156
>11_04_0307 +
16185405-16185713,16185847-16185942,16186626-16186730,
16186938-16187090,16188395-16188478,16188566-16188694,
16188986-16189165,16189555-16189677,16189678-16189794,
16189889-16190053
Length = 486
Score = 32.7 bits (71), Expect = 0.40
Identities = 16/45 (35%), Positives = 17/45 (37%)
Frame = +2
Query: 671 WXXSRCFSRETXPGXRPGXPXPXFPRGALLXXPXXXPXXPPPNPP 805
W S +S P P P P GA L P P PPP P
Sbjct: 12 WLNSPLWSAPPPSSSSPSPPVPPDPYGADLSPPPPPPPKPPPTVP 56
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 32.3 bits (70), Expect = 0.53
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 330 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVGG 166
H P AAA P VP++ P L + GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>07_01_0479 + 3606663-3607448
Length = 261
Score = 31.9 bits (69), Expect = 0.70
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = +2
Query: 707 PGXRPGXPXPXFPRGALLXXPXXXPXXPPPNPP 805
PG RPG P P F G + P P P NPP
Sbjct: 230 PGMRPGMPPPPFRPG--MPPPPPGPQQPGQNPP 260
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 383 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVLG 535
PPP TT++ V L TA + S + QF+C+ TTC + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/62 (32%), Positives = 20/62 (32%), Gaps = 2/62 (3%)
Frame = +1
Query: 694 PGNXPRXPPWXAGAXVPPXXP--AFXXPXVXXXPAPXPPXXGXXVXPXXXGXVXXXXXGX 867
P P PP A A PP P A P P P PP G P G
Sbjct: 311 PAPPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPP 370
Query: 868 GG 873
GG
Sbjct: 371 GG 372
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 228 VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTL 344
V+ H + R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>10_08_0254 +
16236689-16236793,16237760-16237808,16237988-16238076,
16238178-16238234,16238684-16238746,16238828-16238893,
16239520-16239606,16239691-16239784,16240351-16240673,
16241022-16241048,16241065-16241145,16241445-16241476,
16242126-16242266,16242455-16242516,16243170-16243387
Length = 497
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Frame = +1
Query: 625 SAGAXPXTVAKVEPPVXMXQMFFPGNXPRXPPW-XAGAXVPPXXPAFXXPXVXXXPAPXP 801
S GA P + V PP Q F P P W +PP P P + PA P
Sbjct: 243 SNGAVPPQIQHVRPPPPPMQQFPPMQMNGQPVWPPQNTQLPPHMP----PQMHYRPAVRP 298
Query: 802 P 804
P
Sbjct: 299 P 299
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 243 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 154
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>12_02_1174 - 26696869-26698191
Length = 440
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/55 (30%), Positives = 19/55 (34%)
Frame = +1
Query: 640 PXTVAKVEPPVXMXQMFFPGNXPRXPPWXAGAXVPPXXPAFXXPXVXXXPAPXPP 804
P V+PPV + P P P VPP P V P P PP
Sbjct: 195 PTRPPSVKPPVVQPKPQPPPTLPPPSPPPPPPTVPPRTPGDTPAVVEPKPQPPPP 249
>10_08_0880 + 21267034-21267537
Length = 167
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = -3
Query: 813 PXXGGXGGGXXGHXXGXKSRAPRGNXGXGXPGRXPGXVS 697
P G GGG GH G S G G G G G S
Sbjct: 28 PSCGSGGGGGHGHYGGGGSSGGGGGYGGGSGGYGGGGSS 66
>07_03_1400 +
26287124-26287298,26287925-26288007,26288141-26288270,
26288369-26288442,26288797-26288883,26288976-26289100,
26289232-26289292,26289606-26289683,26289785-26289890,
26289978-26290123,26290264-26290380
Length = 393
Score = 28.7 bits (61), Expect = 6.5
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = +1
Query: 469 ISMQLDNWXNDMQTCTFKFGSRMHNSDEMD 558
++++ W ND+++C F+ SR +S+ M+
Sbjct: 83 VNLEGGGWCNDVKSCVFRKSSRRGSSNHME 112
>03_05_0796 + 27787401-27788831
Length = 476
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -3
Query: 753 APRGNXGXGXPGRXPGXVSREK 688
APRG G G GR G VSR+K
Sbjct: 124 APRGEAGGGGRGRGVGKVSRKK 145
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 115 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 270
+L +D L+ YD+ PPDS+ V HA + +R+L + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209
>04_03_0747 -
19251617-19251781,19252377-19252502,19252606-19252716,
19252931-19253679,19254034-19254167,19254595-19254740,
19255166-19255336,19255977-19256828
Length = 817
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +2
Query: 680 SRCFSRETXPGXRPGXPXPXFPRGALLXXPXXXPXXPPPNPP 805
S F + G G P P PR + P P PPP+PP
Sbjct: 35 SASFPSVSGGGCGDGWPSPQNPRSVPVQFPS--PSSPPPSPP 74
>02_04_0264 - 21393029-21393046,21394249-21394814,21395005-21395623
Length = 400
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = -1
Query: 803 GGXGAGXQXTXGXXKAGXXGGTXAPAXQGGXRGXFP 696
GG GAG G AG GG P G R +P
Sbjct: 295 GGAGAGAGGGRGGAGAGAGGGAQEPGGGGARRVVYP 330
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 412 GRGERSPRRWLQPRLAVPRQASTSVPRTP 326
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -3
Query: 357 VRPPQAFRGHQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQMQGQV 190
++PP H + AP P +P+ S P++ + PH S +QM Q+
Sbjct: 551 LQPPAHMLPHAQGSRAPLPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQM 606
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,065,831
Number of Sequences: 37544
Number of extensions: 573267
Number of successful extensions: 2440
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2324
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -