Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_C14
         (874 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   8.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -1

Query: 598 DRTPLTXESDRSSASRA 548
           D+ PL+ +SD SS+SR+
Sbjct: 439 DQPPLSPQSDSSSSSRS 455


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -1

Query: 682  SKGGGGPPPYPCAIXRHSRSSTEXAEPPDRTPLTXESDRSSA 557
            ++G   PPP   A    S SS    +   +TP   ESD S +
Sbjct: 1748 TEGCASPPP--AATSMKSVSSRRRQQRKQQTPGDVESDESES 1787


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -1

Query: 682  SKGGGGPPPYPCAIXRHSRSSTEXAEPPDRTPLTXESDRSSA 557
            ++G   PPP   A    S SS    +   +TP   ESD S +
Sbjct: 1744 TEGCASPPP--AATSMKSVSSRRRQQRKQQTPGDVESDESES 1783


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/26 (26%), Positives = 13/26 (50%)
 Frame = -1

Query: 661 PPYPCAIXRHSRSSTEXAEPPDRTPL 584
           P Y CA+ R    + +  + P+ T +
Sbjct: 259 PEYQCAVKRKEEKAQKEKDKPNSTTM 284


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,708
Number of Sequences: 438
Number of extensions: 2548
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)