Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_C11
(897 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 407 e-114
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 227 2e-60
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 217 2e-57
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 159 7e-40
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 112 7e-26
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 109 4e-25
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 101 1e-22
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 66 8e-12
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 53 6e-08
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 34 0.024
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.13
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.22
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 30 0.51
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.51
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.90
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 1.6
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 3.6
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 27 4.8
SPAC824.06 |tim14||TIM23 translocase complex subunit Tim14|Schiz... 27 4.8
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 4.8
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 6.3
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 8.4
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 407 bits (1001), Expect = e-114
Identities = 186/206 (90%), Positives = 196/206 (95%)
Frame = +1
Query: 163 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 342
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 343 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 522
RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQ 121
Query: 523 IMFETFNTPAMYVAIQAVLSLYAXGRTTGIVLDSGDGVSHTVPIYEGYALPHAILXXDLA 702
I+FETFN PA YVAIQAVLSLYA GRTTGIVLDSGDGV+HTVPIYEGYALPHAI+ DLA
Sbjct: 122 IIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLA 181
Query: 703 GRDLTDYLMKILTERGYSFTTTXERE 780
GRDLTDYLMKIL ERGY+F+TT ERE
Sbjct: 182 GRDLTDYLMKILMERGYTFSTTAERE 207
Score = 40.3 bits (90), Expect = 4e-04
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = +2
Query: 779 KIVRDIKXKLCYVALDFXQEMAPLXXXSS 865
+IVRDIK KLCYVALDF QE+ SS
Sbjct: 207 EIVRDIKEKLCYVALDFEQELQTAAQSSS 235
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 227 bits (555), Expect = 2e-60
Identities = 101/201 (50%), Positives = 144/201 (71%), Gaps = 1/201 (0%)
Frame = +1
Query: 181 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 360
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 361 KYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 537
+ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+ + +ET
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYET 131
Query: 538 FNTPAMYVAIQAVLSLYAXGRTTGIVLDSGDGVSHTVPIYEGYALPHAILXXDLAGRDLT 717
N PA+ ++Q VL+LYA RTTGIVL+ GDG++H+VPIY+G+++P AI ++ GRD+T
Sbjct: 132 LNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVT 191
Query: 718 DYLMKILTERGYSFTTTXERE 780
DYL L + G+ ++ E+E
Sbjct: 192 DYLQLQLRKSGHELVSSAEKE 212
Score = 31.1 bits (67), Expect = 0.22
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +2
Query: 779 KIVRDIKXKLCYVALDFXQEM 841
+IVR+IK K CYVA DF E+
Sbjct: 212 EIVREIKEKCCYVASDFRSEI 232
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 217 bits (530), Expect = 2e-57
Identities = 101/206 (49%), Positives = 144/206 (69%), Gaps = 2/206 (0%)
Frame = +1
Query: 169 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 342
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 343 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 522
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM +
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 523 IMFETFNTPAMYVAIQAVLSLYAXGRTTGIVLDSGDGVSHTVPIYEGYALPHAILXXDLA 702
MFE + +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE L H + D+A
Sbjct: 122 TMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVA 181
Query: 703 GRDLTDYLMKILTERGYSFTTTXERE 780
GRD T YL+ +L +GY+F T + E
Sbjct: 182 GRDATRYLISLLLRKGYAFNRTADFE 207
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 159 bits (385), Expect = 7e-40
Identities = 88/221 (39%), Positives = 125/221 (56%), Gaps = 32/221 (14%)
Frame = +1
Query: 181 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 309
+++DNG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 310 ------DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 468
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126
Query: 469 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAXGRT--------TGIVLDS 624
LLTE PLNP NRE +IMFE+FN +Y+A+QAVL+L A + TG V+DS
Sbjct: 127 LLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDS 186
Query: 625 GDGVSHTVPIYEGYALPHAILXXDLAGRDLTDYLMKILTER 747
GDGV+H +P+ EGY + +I LAGRD+T ++ +L +R
Sbjct: 187 GDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDR 227
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 112 bits (269), Expect = 7e-26
Identities = 63/196 (32%), Positives = 100/196 (51%)
Frame = +1
Query: 166 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 345
+EV+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 346 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 525
G + +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K +
Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLET 120
Query: 526 MFETFNTPAMYVAIQAVLSLYAXGRTTGIVLDSGDGVSHTVPIYEGYALPHAILXXDLAG 705
MFE+ PA Y+A Q + +A G+ T ++D G S IY+G+ L +G
Sbjct: 121 MFESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSG 180
Query: 706 RDLTDYLMKILTERGY 753
+ D L + L ++ +
Sbjct: 181 NAINDILAQTLRDKNF 196
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 109 bits (263), Expect = 4e-25
Identities = 60/196 (30%), Positives = 106/196 (54%), Gaps = 3/196 (1%)
Frame = +1
Query: 181 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 360
LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG++ + G ++
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSI 82
Query: 361 -KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 537
+ P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFEL 141
Query: 538 FNTPAMYVAIQAVLSLYAXGR--TTGIVLDSGDGVSHTVPIYEGYALPHAILXXDLAGRD 711
+N P++ I + S Y + ++GIVL+ G+ SH +P+ G + G
Sbjct: 142 YNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQ 201
Query: 712 LTDYLMKILTERGYSF 759
+ YL+K+ + SF
Sbjct: 202 SSSYLLKLFQIKYPSF 217
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 101 bits (242), Expect = 1e-22
Identities = 55/200 (27%), Positives = 101/200 (50%), Gaps = 2/200 (1%)
Frame = +1
Query: 166 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 345
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 346 GI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 519
I + +K +GI+ +W+ W +L+V P E+ +++TE NP++ R+++
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIM 121
Query: 520 QIMFETFNTPAMYVAIQAVLSLYAXGRTTGIVLDSGDGVSHTVPIYEGYALPHAILXXDL 699
+ FE + PA Y+ QAV +A ++T +++D G + P+ +G + I L
Sbjct: 122 EAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDGLIIRKGIFKQSL 181
Query: 700 AGRDLTDYLMKILTERGYSF 759
AG L + ++ F
Sbjct: 182 AGDFLNANIEQLFNTMNIEF 201
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 65.7 bits (153), Expect = 8e-12
Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 4/130 (3%)
Frame = +1
Query: 367 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 534
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 535 TFNTPAMYVAIQAVLSLYAXGRTTGIVLDSGDGVSHTVPIYEGYALPHAILXXDLAGRDL 714
P +A + ++ LYA G G+V+D G + PI +G + A L GR +
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYM 231
Query: 715 TDYLMKILTE 744
T +L +L E
Sbjct: 232 TQHLQNLLRE 241
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 52.8 bits (121), Expect = 6e-08
Identities = 50/210 (23%), Positives = 90/210 (42%), Gaps = 18/210 (8%)
Frame = +1
Query: 181 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 360
+V+DNG+ KAGFAG P+ + R + G + ++G+E + TL
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKD-------GNR-LFLGNELANCNDFTTL 57
Query: 361 KYPIEH--GIVTNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIM 528
++ H G + +W +W N + P ++ +LLT+ + Q++
Sbjct: 58 QFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLV 117
Query: 529 FETFNTPAMYVAIQAVLSLYAXGRTT--------------GIVLDSGDGVSHTVPIYEGY 666
FE F A A L + G T +V+DSG +H +P+ +
Sbjct: 118 FEEFQFDAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGECVLVIDSGYSFTHIIPVIDFS 177
Query: 667 ALPHAILXXDLAGRDLTDYLMKILTERGYS 756
A+ D+ G+ LT+YL ++++ R Y+
Sbjct: 178 VQEQAVKRVDVGGKLLTNYLKEVISYRKYN 207
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 34.3 bits (75), Expect = 0.024
Identities = 28/146 (19%), Positives = 64/146 (43%), Gaps = 12/146 (8%)
Frame = +1
Query: 358 LKYPIEHGIVTNWD---------DMEKIWHHTFYNELRVAPEE---HPVLLTEAPLNPKA 501
L YPI+ G+ D D+ +I+ ++ + L++ + + V+ L +
Sbjct: 198 LFYPIKSGVFNESDYASSQQLLADIYEIFKYSITSLLQIPVSQLSQYSVIFIVPDLYDRV 257
Query: 502 NREKMTQIMFETFNTPAMYVAIQAVLSLYAXGRTTGIVLDSGDGVSHTVPIYEGYALPHA 681
EK+ I+F + + +++ + + G + V+D G + + EG +P++
Sbjct: 258 YVEKILDILFFDLHFGKAAIVQESLCTSFGAGMSAACVVDMGAQKTSISCVEEGVVVPNS 317
Query: 682 ILXXDLAGRDLTDYLMKILTERGYSF 759
+ + G D+T MK+L + +
Sbjct: 318 RIKINYGGDDITLLFMKLLMRSHFPY 343
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.13
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +1
Query: 427 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 570
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.22
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 226 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 369
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.9 bits (64), Expect = 0.51
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 572 PCSRCTRXVVPPVSCWTPATVSPTPCPSTKDTHSP 676
PC+ + PPV+C TP P C K H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.51
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -2
Query: 323 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 162
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
Score = 26.6 bits (56), Expect = 4.8
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +2
Query: 527 CSKHSTRPPCTSPSKPCSRCTRXVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 685
C+ ++ PP T S S VPP S T + PT ST SP P+
Sbjct: 172 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 224
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.1 bits (62), Expect = 0.90
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +2
Query: 551 PCTSPSKPCSRCTRXVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 685
P T+P P T V P S P+ P P PS++ P PS
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 334 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 245
+ L+ K+PS PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 27.1 bits (57), Expect = 3.6
Identities = 23/60 (38%), Positives = 28/60 (46%)
Frame = -1
Query: 363 FEGQDTSFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 184
F G +F CLI++IR +SH D EHG II C T L G I+YY
Sbjct: 47 FAGLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 26.6 bits (56), Expect = 4.8
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -3
Query: 220 NRPCTYRSHCLLPTRQ-PLRRTS*ISEIS 137
NRP YRSH + TR+ PL S + IS
Sbjct: 323 NRPSNYRSHSSMGTRRSPLNSPSQLDPIS 351
>SPAC824.06 |tim14||TIM23 translocase complex subunit
Tim14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 140
Score = 26.6 bits (56), Expect = 4.8
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 729 EDPHRARXLVHYHRRAGKLFVTSRXNCATSLLTSXRKWXRXS 854
++ HR L ++ R G +V S+ N A SLL + R + S
Sbjct: 69 KEAHRRLMLANHPDRGGSPYVASKVNEAKSLLDADRSIRKFS 110
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 4.8
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 326 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 210
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 6.3
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 469 LLTEAPLNPKANREKMTQIMFETFN 543
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 8.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 363 FEGQDTSFALCLISYIRVLLSHTDHHA 283
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,628,745
Number of Sequences: 5004
Number of extensions: 78658
Number of successful extensions: 251
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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