Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_C09
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    29   0.90 
SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces po...    29   1.2  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    29   1.2  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    27   4.8  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    27   4.8  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    26   8.4  
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S...    26   8.4  

>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 660 KYKIFKCIMC*TSCICLLLESFA 728
           KYK+F CI C  S + L++E F+
Sbjct: 468 KYKVFSCITCHNSPVYLVIELFS 490


>SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 190 LTTRKLAERLGVQQPALYWHFRNKR 264
           +  +KLAE LG+ QP + WH    R
Sbjct: 210 MVQQKLAEELGLLQPEIAWHTERDR 234


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1275

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 627  VQLCHTTEVRFLHKDPKLAV-FPVTTL*ND 541
            + LCH   +  L  DPKLAV FP  ++ ND
Sbjct: 1109 IALCHNKGIDVLRLDPKLAVGFPSPSVLND 1138


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +3

Query: 354 DRECPQLQAGAARLPPAQWHHVLELQVAAALEYPSRGPSL--RVPSFLVQSGPYSES 518
           D+  P LQ   ++LP  QW  ++ L+   A   P   P +  + P FL      SE+
Sbjct: 699 DQLDPNLQT-LSKLPRTQWQTLINLEAIKARNAPKEVPKVPEKAPFFLPSLKDQSEA 754


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 543 DGQCLAYNTTHYRDHFVQESWVRVSLGPSRDTLER 439
           DG+ ++Y   HY + +++   + V+  PS   LER
Sbjct: 859 DGEAISYAVLHYLNQYIKSYLLFVTHFPSLGILER 893


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -3

Query: 116 LDTLSLINIICPPTYQVIKNPRQAQWISHSARGF 15
           +D+ S IN++    Y+++ NP   + + ++AR F
Sbjct: 131 IDSKSEINVLLHGIYRILLNPTDKESLENAARCF 164


>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = -2

Query: 234 RLLNPQPFRQFACRQTVYADLVQQVQGGTDHCIRLQLCHA*HFITDKHNMSTNLSSDKES 55
           R+L+P     F+      AD      GG+D CIRL      H + +K+       S + S
Sbjct: 230 RILSPIRSHDFSIETITRADSDSLYVGGSDGCIRLL-----HILPNKYERIIGQHSSR-S 283

Query: 54  APSTMDIT 31
               +D+T
Sbjct: 284 TVDAVDVT 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,398,362
Number of Sequences: 5004
Number of extensions: 64352
Number of successful extensions: 158
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)