Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_C08
(920 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0188 + 15269347-15270213 33 0.24
11_06_0610 - 25449085-25453284 32 0.74
08_02_0526 + 18184146-18184168,18184247-18184438,18184846-181849... 31 0.97
03_01_0021 + 186827-187243 30 3.0
02_01_0020 - 127572-127637,127760-127819,127903-128004,128099-12... 29 3.9
04_01_0541 - 6998030-6998521,7000666-7000732,7001057-7001202 29 5.2
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 26 5.6
06_02_0119 + 12040476-12041273,12042767-12042834,12042931-12042979 29 6.9
02_01_0279 - 1860410-1860508,1861536-1861889,1862660-1862805,186... 29 6.9
01_06_1678 - 39095986-39096205,39096400-39096477,39096578-390969... 26 7.6
02_05_0328 + 27984086-27984793 23 8.4
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 28 9.1
09_04_0377 + 17086775-17088310 28 9.1
07_01_0678 - 5103836-5104613,5104697-5104888,5104994-5105036,510... 28 9.1
06_01_0036 + 364316-365758 28 9.1
01_05_0534 + 22999876-23000333,23000835-23000949 28 9.1
>03_03_0188 + 15269347-15270213
Length = 288
Score = 33.5 bits (73), Expect = 0.24
Identities = 21/69 (30%), Positives = 27/69 (39%)
Frame = +2
Query: 380 RPSVIMRAHKDGTCSPEPLPPPPAHGMNMLXDT*I*NEPRTQLFTNXIHCEPXVFLPFRV 559
RPS + H P P PPPP H + + N T+ + +F V
Sbjct: 154 RPSPLKYTHSH----PTPPPPPPLHHQACTTTSFLGNAAAATTSTSSLVDALALFAKSNV 209
Query: 560 XVQPPSPPP 586
V PP PPP
Sbjct: 210 MVAPPPPPP 218
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 31.9 bits (69), Expect = 0.74
Identities = 40/164 (24%), Positives = 51/164 (31%), Gaps = 5/164 (3%)
Frame = +2
Query: 161 PLSPPSTPPLMENKVELPLKKIAAKRARESSSPPAGLVTPQ-PSDSEGEDEFSKRSXXXX 337
P SP +PP + P + + E SSPP +P PS EG +S
Sbjct: 783 PHSPEKSPPSEAHPTSPPPSEKSPPTPAEESSPPTPEKSPSPPSGHEGTPPSPVKSSSPP 842
Query: 338 XXXXXXXXXXXXXYRPSVIMRAHKDGTCSPEPLPPPPAHGMNMLXDT*I*NEPRTQLFTN 517
P AH PE PPPP I P + +
Sbjct: 843 PEAHVSSPPPEKSSSPP--PEAHVSSPPPPEKSPPPPETKSPPTLTPEI--SPPPEGKSP 898
Query: 518 XIHCEPXVFLPFRVXVQPPSPPPK----IEEARVPXTPTWECQP 637
H P + PP+P PK E VP +P P
Sbjct: 899 PSHTPESSSPPSKESEPPPTPTPKSSPPSHEEYVPPSPAKSTPP 942
Score = 29.1 bits (62), Expect = 5.2
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = +2
Query: 161 PLSPP----STPPLMENKVELPLKKIAAKRARESSSPPA 265
PL PP S PP + + P K+ A A+ES PPA
Sbjct: 1327 PLPPPVPQVSLPPPKQESLPPPAKEAEAPPAKESKPPPA 1365
>08_02_0526 +
18184146-18184168,18184247-18184438,18184846-18184954,
18185071-18185220,18185973-18186136,18186273-18186359,
18187083-18187137,18187911-18188333
Length = 400
Score = 31.5 bits (68), Expect = 0.97
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +1
Query: 547 PVPGRRSTSQSPTED*RSSRSXHPHLGMSTRNXXPR 654
P P RRSTS+SP SRS P ++R+ PR
Sbjct: 29 PTPVRRSTSRSPPPKKSDSRSPPPRRRSTSRSPRPR 64
>03_01_0021 + 186827-187243
Length = 138
Score = 29.9 bits (64), Expect = 3.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 98 VFILLNVPILTRMSTLLEVCGPLSPPSTPPL 190
+F+ LNV +M +++ C P P TPP+
Sbjct: 11 LFLALNVLFTMQMGAVVQACEPYCPTPTPPV 41
>02_01_0020 -
127572-127637,127760-127819,127903-128004,128099-128194,
128649-128756,128849-128899,129018-130118
Length = 527
Score = 29.5 bits (63), Expect = 3.9
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 215 LKKIAAKRARESSSPPAGLVTPQPSDSEGEDE 310
++K+ +RA+E ++P P SDS+ EDE
Sbjct: 103 IEKLERRRAKEEAAPDDSFWEPTDSDSDEEDE 134
>04_01_0541 - 6998030-6998521,7000666-7000732,7001057-7001202
Length = 234
Score = 29.1 bits (62), Expect = 5.2
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = -3
Query: 309 SSSPSESEGWGVTRPAGGDDDSLARFAAIFLRGSSTLFSINGGVDG--GERG 160
S S G GV+ +GGD D R +AI RG + S++GG +G GE G
Sbjct: 156 SGGVSAGGGDGVSN-SGGDGDGNGRVSAIGQRGLDSDGSLDGGGNGDIGEGG 206
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 26.2 bits (55), Expect(2) = 5.6
Identities = 17/62 (27%), Positives = 23/62 (37%)
Frame = +2
Query: 425 PEPLPPPPAHGMNMLXDT*I*NEPRTQLFTNXIHCEPXVFLPFRVXVQPPSPPPKIEEAR 604
P P PPPP ++L P L + P + + PP PPP +R
Sbjct: 619 PPPPPPPPLPNHSVLPPPPP-PPPPPSLPNRLVPPPPAPGIGNKFPAPPPPPPPPRSSSR 677
Query: 605 VP 610
P
Sbjct: 678 TP 679
Score = 21.0 bits (42), Expect(2) = 5.6
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2
Query: 422 SPEPLPPPP 448
SP P PPPP
Sbjct: 601 SPPPPPPPP 609
>06_02_0119 + 12040476-12041273,12042767-12042834,12042931-12042979
Length = 304
Score = 28.7 bits (61), Expect = 6.9
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +2
Query: 509 FTNXIHCEPXVFLPFRVXVQPPSPPPKIEEARVPXTPT 622
F + +H + ++ PP PPP + A+ P PT
Sbjct: 35 FPSNLHIDDLLYGQHHALPHPPPPPPPPQPAKEPPPPT 72
>02_01_0279 -
1860410-1860508,1861536-1861889,1862660-1862805,
1862885-1862925,1863010-1863173,1863217-1863281,
1863410-1863670,1863754-1863817,1863946-1864006,
1864112-1864473
Length = 538
Score = 28.7 bits (61), Expect = 6.9
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2
Query: 410 DGTCSPEPLPPPP 448
+G+C P+P PPPP
Sbjct: 78 EGSCDPDPTPPPP 90
>01_06_1678 -
39095986-39096205,39096400-39096477,39096578-39096949,
39097374-39097671,39097867-39098077,39098331-39099023
Length = 623
Score = 25.8 bits (54), Expect(2) = 7.6
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +2
Query: 419 CSPEPLPPPPAH 454
C P P PPPP H
Sbjct: 115 CPPRPPPPPPPH 126
Score = 21.0 bits (42), Expect(2) = 7.6
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +2
Query: 569 PPSPPPKIEEARVPXTPTWECQP 637
PP PP RVP P + QP
Sbjct: 138 PPDHPPPPPPCRVPPPPGYR-QP 159
>02_05_0328 + 27984086-27984793
Length = 235
Score = 23.4 bits (48), Expect(2) = 8.4
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +2
Query: 419 CSPEPLPPPP 448
C+P P PPPP
Sbjct: 68 CTPAPPPPPP 77
Score = 23.4 bits (48), Expect(2) = 8.4
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +2
Query: 569 PPSPPPKIEEARVPXTP 619
PP PPP++ A P P
Sbjct: 72 PPPPPPEVTVAASPDDP 88
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 28.3 bits (60), Expect = 9.1
Identities = 18/44 (40%), Positives = 19/44 (43%)
Frame = +2
Query: 161 PLSPPSTPPLMENKVELPLKKIAAKRARESSSPPAGLVTPQPSD 292
P +PP PP M LP I A SS PP L P P D
Sbjct: 374 PPNPPPPPPPMSPSCLLP-PIIPAPTFTYSSPPPPPLYYPPPPD 416
>09_04_0377 + 17086775-17088310
Length = 511
Score = 28.3 bits (60), Expect = 9.1
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Frame = +1
Query: 502 TVIHXPXTLRAXRLPPVPGRRSTSQSPT--ED*RSSRSXHPHLGMSTRNXXPRXXTARSP 675
+V+H P R P RRS S+SP+ + R RS P+ R+ P R
Sbjct: 10 SVVHLPGRSRVSASPSPRRRRSPSRSPSPRRNRRRDRSPSPYRSRRDRSPSPYRDRRRQW 69
Query: 676 XP 681
P
Sbjct: 70 SP 71
>07_01_0678 -
5103836-5104613,5104697-5104888,5104994-5105036,
5105712-5105835,5105924-5106016,5106754-5106931,
5107032-5107138,5108098-5108179,5108277-5108314,
5108409-5108495,5109025-5109135,5109282-5109773
Length = 774
Score = 28.3 bits (60), Expect = 9.1
Identities = 24/92 (26%), Positives = 35/92 (38%)
Frame = +2
Query: 173 PSTPPLMENKVELPLKKIAAKRARESSSPPAGLVTPQPSDSEGEDEFSKRSXXXXXXXXX 352
PS PP + + P+ A A S PP Q + +EGE+E K+
Sbjct: 20 PSPPPHADPRSAPPMPSSADADAPSSPPPPQ-----QEAAAEGEEEEEKKQQREEEEEAP 74
Query: 353 XXXXXXXXYRPSVIMRAHKDGTCSPEPLPPPP 448
P+ +A C+ +P PPPP
Sbjct: 75 APAPAPAP-EPAP-RKARLPRACNSKPKPPPP 104
>06_01_0036 + 364316-365758
Length = 480
Score = 28.3 bits (60), Expect = 9.1
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +2
Query: 119 PILTRMSTLLEVCGPLSPPSTPPLMENKVELPLKKIAAKRARESSSPPAGLVT 277
P L R + LL L PP+ P+ +++PLK +AA +A +SP T
Sbjct: 168 PPLLRAAALLR--DALLPPTALPVSSTPLDVPLK-LAAHKALADASPTVQFTT 217
>01_05_0534 + 22999876-23000333,23000835-23000949
Length = 190
Score = 28.3 bits (60), Expect = 9.1
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = +2
Query: 161 PLSPPSTPPLMENKVELPLKKIAAKRARESSSPPAGLVTPQPSDS 295
PLSPP P + L K A SSSPP P+P +
Sbjct: 53 PLSPPPKTPTLSTPPTLSQPPTPVKPAAPSSSPPPS-QDPEPKQA 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,718,242
Number of Sequences: 37544
Number of extensions: 415641
Number of successful extensions: 2793
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2761
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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